Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq27 95.1 9e-15 seq19 82.4 5e-11 >seq27 Length=1720986 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||||| || ||||| ||| |||| || | | Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || ||||| |||||||| ||| | || | || Sbjct 553850 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553909 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || || || |||||| |||| ||| || ||| || |||||||||| Sbjct 553910 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553969 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||| || | ||| | || |||||||||||||| || Sbjct 553970 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554016 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||||| || ||||| ||| |||| || | | Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || ||||| |||||||| ||| | || | || Sbjct 554306 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554365 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || || || |||||| |||| ||| || ||| || |||||||||| Sbjct 554366 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554425 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||| || | ||| | || |||||||||||||| || Sbjct 554426 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554472 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||||| || ||||| ||| |||| || | | Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || ||||| |||||||| ||| | || | || Sbjct 554534 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554593 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || || || |||||| |||| ||| || ||| || |||||||||| Sbjct 554594 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554653 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||| || | ||| | || |||||||||||||| || Sbjct 554654 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554700 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||||| || ||||| ||| |||| || | | Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || ||||| || || || ||| | || | || Sbjct 554762 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554821 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || || || |||||| |||| || || ||| || |||||||||| Sbjct 554822 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACAAC 554881 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAAT 22068 || || |||||||| || | || |||| |||||||||||||| || | ||||| Sbjct 554882 ATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGGTTTTTAAT 554936 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || ||||||| || ||||| ||| |||| || | | Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || ||||| |||||||| ||| | || | || Sbjct 553622 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553681 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || || || |||||| |||| ||| || ||| || |||||||||| Sbjct 553682 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553741 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||| || | ||| | || |||||||||||||| || Sbjct 553742 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 553788 >seq19 Length=2400328 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 |||||||||| |||| | ||||||||||| || |||||||| ||| |||| ||| || Sbjct 232720 CAAAATGCAAGTATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGC 232779 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGT 21946 | |||||| | || |||| |||||||| ||||| || || | ||||| Sbjct 232780 ATCCGAAACGATTAGGAATGTTAAATCAAAAATTGAGGATAAGGAAGGAATCCCACCTG- 232838 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 | |||||||| || || | | | || || || | || ||| | | | |||| || Sbjct 232839 --ATCAACAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGA 232896 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||| || |||||||| || || | || ||||| Sbjct 232897 CTACAACATCCAGAAGGAGTCCACCTTGCACTTGGTA 232933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124677789912