Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq27 116 9e-21 >seq27 Length=1720986 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || |||| | || | ||| || |||||||||||||| ||||| Sbjct 553753 TTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAA 553694 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | || ||| | || || ||||||||||| || ||||| ||||| || || Sbjct 553693 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATT 553634 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| || ||||| || | ||||| ||||| || || || ||||| || Sbjct 553633 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCAC 553574 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 553573 AAAAATTTGCAT 553562 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || |||| | || | ||| || |||||||||||||| ||||| Sbjct 553981 TTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAA 553922 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | || ||| | || || ||||||||||| || ||||| ||||| || || Sbjct 553921 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATT 553862 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| || ||||| || | ||||| ||||| || || || || || || Sbjct 553861 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTAC 553802 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 553801 AAAAATTTGCAT 553790 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || |||| | || | ||| || |||||||||||||| ||||| Sbjct 554437 TTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAA 554378 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | || ||| | || || ||||||||||| || ||||| ||||| || || Sbjct 554377 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATT 554318 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| || ||||| || | ||||| ||||| || || || || || || Sbjct 554317 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTAC 554258 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 554257 AAAAATTTGCAT 554246 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || |||| | || | ||| || |||||||||||||| ||||| Sbjct 554665 TTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAA 554606 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | || ||| | || || ||||||||||| || ||||| ||||| || || Sbjct 554605 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATT 554546 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| || ||||| || | ||||| ||||| || || || || || || Sbjct 554545 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTAC 554486 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 554485 AAAAATTTGCAT 554474 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || |||| | || | ||| || |||||||||||||| ||||| Sbjct 554209 TTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAA 554150 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | || ||| | || || ||||| || ||||| ||||| ||||| || || Sbjct 554149 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATT 554090 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| || ||||| || | ||||| ||||| || || || || || || Sbjct 554089 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTAC 554030 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 554029 AAAAATTTGCAT 554018 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || || |||| | || | |||||| |||||||||||||| ||||| Sbjct 554893 TTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAA 554834 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | || ||| | || || ||||| || ||||| ||||| ||||| || || Sbjct 554833 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATT 554774 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| || ||||| || | ||||| ||||| || || || || || || Sbjct 554773 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTAC 554714 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 554713 AAAAATTTGCAT 554702 Score = 102 bits (112), Expect = 2e-16 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| | || | |||||| |||||||||||||| ||||| Sbjct 553525 TTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAA 553466 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | || ||| || ||| || ||||||||||| || ||||| ||||| || Sbjct 553465 AATGAGTCTTTGCTGA---TCGGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTAC 553409 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||||| || | ||| || ||||| || | ||||| ||||| || Sbjct 553408 ATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCC 553361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653976798984