Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq27 138 1e-27 seq17 87.8 2e-12 >seq27 Length=1720986 Score = 138 bits (152), Expect = 1e-27 Identities = 990/1581 (63%), Gaps = 50/1581 (3%) Strand=Plus/Minus Query 113705 TGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCC 113764 || || |||||| || ||||| |||||||||||||| | | |||| |||||||||| Sbjct 632649 TGGTCAATGAAGGCGCCTCGATCGGCCGCCATATCAATGATGTTCTTCTGCTTGATTTCC 632590 Query 113765 CACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAG 113824 || |||||| | ||||| | ||| | || | ||||| || |||| ||| | | Sbjct 632589 CAAACAGTTTTATAGAGCTCCTTCAAGTCGTTGGGGATTTCGCTAATATATTGCACG--- 632533 Query 113825 CCACCCGCCTTGACCA-TGAGATC---CTTCATATCCTTTGACCAGAGACCAATCTTTTT 113880 | ||| || || | || | |||||| |||| ||| |||||| | Sbjct 632532 -CTTCCGTTGTGTGCAATCAGCTGTTGCTTCATGTCCTCATCCCACAGACCACGATCGAA 632474 Query 113881 GAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAG 113940 ||| |||| || | || || || |||| ||| || || || || || Sbjct 632473 GAGGTCCTTCAATAAGTGGGGGTTCACCACAAAAAATTCTCCACTCAGAACCCGCCTGTA 632414 Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 || || || |||||||||| |||||| |||||||||| || | || || | || || Sbjct 632413 GTAAATGTTACTCGTGTATGGTTCAAAGGACTCATTGTTGCCAAGAATCTGTGACGTCGA 632354 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 114060 || || ||||| || || | ||||| || | | || | || | | || ||| Sbjct 632353 AGCAGTAGGCATTGGAGCTAAAAGAAGCGAATTTCTCAATCCGTGTTTCTTTATTTTTTC 632294 Query 114061 CTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGC------CACATATCAAA 114114 || || |||||||| | | ||| | ||| ||| | |||||||| || Sbjct 632293 TTTCAGTTTATCCCAGTCCCAATA---CTTATTATCCACCTTCACATTCCACATATCGAA 632237 Query 114115 CTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTC 114174 ||| || || || ||| ||||| |||| | | || ||||| || || | | | Sbjct 632236 CTGAAGAATTCCCTGGCTAGCTGGACTACCCTGATAGGTTTCGTAAGGTCCGTATATTTG 632177 Query 114175 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 114234 |||||||| | | ||| || || || | ||||||||| || ||||| | ||| Sbjct 632176 TGCCAATTCCATGGACATCTCCAGAGCAGCATAATACATTGTTTCGAAAATTCTTTTATT 632117 Query 114235 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 114294 | | | || || || || ||| | | | || | || || || || | Sbjct 632116 TAATTCTTTTGCAGAATCTGATTCATATGGGTATCTAAGTAGCATGAAGGTGTCTGCCAA 632057 Query 114295 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCA 114353 || || || || | || || || | |||||| | || || | || ||| || | Sbjct 632056 TCCCTGTACTCCTATACCTATAGGTCTGTGTCTCTTGTTCGATCGCTC-AGCTTCCTGAA 631998 Query 114354 CGGGATAAAAATTCCTATCGATAACCCTATTTAG----ATTTTTG-GTGACAACCTTTGT 114408 | || || ||||||| || || ||||| | | || | || | || ||||| Sbjct 631997 CAGGGTAGTAATTCCTTTCAAT-----TATTTGGTCCAAGTTCCGAGTAATAATTTTTGT 631943 Query 114409 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 114468 ||||| | ||||| | ||| || | | ||| ||| |||| | || | Sbjct 631942 AATTTCGTACAGCTTCTTAAAATTGAATTCCCTTTTATCTACATCGACAAATTTGCACAA 631883 Query 114469 GGCGATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCA-GTGTACTCTATAAT 114525 ||||| || |||| ||||| || || | | || || | | || || || || || Sbjct 631882 CGCGATAGAAGCCAAGTTACATAC---GGCCACTTCGTCTGGTGATGTATATTCAATGAT 631826 Query 114526 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 114585 || ||||| || || || || || || || || |||||||| ||||| | ||| Sbjct 631825 CTCACAACACAGGTTACTACATTTTATCGTACCTAAATTTTTTTGATTCGACTTCGCGTT 631766 Query 114586 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 ||| | |||||| || |||||||| || ||| || || | || || |||||||| Sbjct 631765 ACAAGAATCCTTATACAGCATGTACGGAACCCCTGTTTCTATCTGACTCTGCAGAATAGC 631706 Query 114646 CTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 114705 ||| | ||| ||| | || || || | ||||||||||| || ||| Sbjct 631705 AAACCATAGATCTTGTGCTAGTACTGTTTTTTTACCCATACCCTCCTCCTCATATTTTAA 631646 Query 114706 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCA 114765 || || ||| || ||| ||||| | ||| | |||||| | || ||||| Sbjct 631645 ATATAGCTTTTCGAATTCTGCACCCCATGACTCACTTAACCCTGGACATTCATTCGGGCA 631586 Query 114766 GAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAG 114825 | | || ||| | |||| || | |||||| || ||||| || | ||| | Sbjct 631585 CATCAAAGTCCAATTTTGGTTTTCCTTTACTCTCTTCATAAAAAGGTCAGGTACCCATAC 631526 Query 114826 AGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 114885 ||| |||| ||||| | | | |||||| | ||| ||||| ||| | ||||| Sbjct 631525 AGCATAGAAAAGATCTCTAGCTCTTAGTTCTTCCTTCCCATGATTTTTACGAAGATCCAA 631466 Query 114886 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC---G 114942 ||| || | ||||| | ||||||||||| | ||||| |||| || ||||| | Sbjct 631465 AAACTCAAAAATATCTGAATGCCACGGTTCGATATACACTGCGAAAGATCCCTTCCTCTT 631406 Query 114943 ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGAT 115002 | ||| | |||| |||||| || ||||| ||||||| || | |||||||| | | Sbjct 631405 TCCGCCACCTTGGTCTACATATCTAGCTGTATCATTAAACACTCTCAGCATTGGTACTAA 631346 Query 115003 ACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGAT 115062 || | ||| ||||| || || | ||| ||| || | |||| | ||| || | Sbjct 631345 TCCGTTGGATATTCCATTCGTTCCTCTAATGTAAGAATTTTGTCCTCTAATATCCTGTA- 631287 Query 115063 GTGC-ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 115121 ||| | |||||||| || || || || | ||||||| | ||| | || Sbjct 631286 CTGCTACTCCAATACCACCAGCTGTTTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGA 631227 Query 115122 AGATCCCGTCGATCGAGTCACCCTTATT---TGC-GATAAGGAAGCAGCTCGACATTTGT 115177 | || || || ||||| | || ||| ||| | || || || |||||||| Sbjct 631226 AAATGCCTTCAATCGAAT----CTGATTTCATGCAAAGGAGAAAACATGAAGACATTTGG 631171 Query 115178 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 115236 || |||||||| |||| ||||| | ||| ||||| ||||| | || |||| | || || Sbjct 631170 GGTCTTGGTGTGCCAGAATTGAACAAGGTAGGTGTTGCGTGCGT-AAAATACTTCTGAGA 631112 Query 115237 CATCTTATCGTAGGTCTCCAA 115257 |||| || ||| ||||| || Sbjct 631111 CATCAGATGGTACGTCTCTAA 631091 >seq17 Length=2179341 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 11020 || || || ||||||||||| || ||||||||||| || || || |||| | | Sbjct 750787 CCAACTGCATCAATTTCATCAATAAAAACGATACATGGAGCATGTTTTTTGGCAGCCTGG 750728 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCG 11080 || | |||| | ||| ||||||| || || || ||||||||| |||| | || | Sbjct 750727 AAAAGCTCTCTTATCCTCCTGGCACCAACTCCTACGAACATTTCCTCAAATTCGGATCCT 750668 Query 11081 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTC 11123 || ||| ||||| ||||| |||| ||| ||||| ||||||| Sbjct 750667 GATGCTTGAATGAATGGGACATTGGCTTCCCCCGCTATGGCTC 750625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353390926240