Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq27 104 2e-17 >seq27 Length=1720986 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG 64274 ||| || || || | |||| |||| ||| | || ||||||||||| ||||||||||| | Sbjct 554017 ACCACCTCGTAAACGTAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 553959 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| | | || || | || || ||||| ||||||| | ||||| || || | Sbjct 553958 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 553899 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||| |||||||| ||||||||||| |||||| || | || || | || | Sbjct 553898 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 553839 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | |||||| || || | |||||||| ||||||||||| Sbjct 553838 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG 64274 ||| || || || | |||| |||| ||| | || ||||||||||| ||||||||||| | Sbjct 554473 ACCACCTCGTAAACGTAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 554415 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| | | || || | || || ||||| ||||||| | ||||| || || | Sbjct 554414 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 554355 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||| |||||||| ||||||||||| |||||| || | || || | || | Sbjct 554354 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554295 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | |||||| || || | |||||||| ||||||||||| Sbjct 554294 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG 64274 ||| || || || | |||| |||| ||| | || ||||||||||| ||||||||||| | Sbjct 554701 ACCACCTCGTAAACGTAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 554643 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| | | || || | || || ||||| ||||||| | ||||| || || | Sbjct 554642 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 554583 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||| |||||||| ||||||||||| |||||| || | || || | || | Sbjct 554582 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554523 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | |||||| || || | |||||||| ||||||||||| Sbjct 554522 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG 64274 ||| || || || | |||| |||| ||| | || ||||||||||| ||||||||||| | Sbjct 553789 ACCACCTCGTAAACGTAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 553731 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| | | || || | || || ||||| ||||||| | ||||| || || | Sbjct 553730 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 553671 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||| |||||||| ||||||||||| |||||| || | || || | || | Sbjct 553670 GAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 553611 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | |||||| || || | || || || ||||||||||| Sbjct 553610 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG 64274 ||| || || || | |||| |||| ||| | || ||||||||||| ||||||||||| | Sbjct 554245 ACCACCTCGTAAACGTAAG-ACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGG 554187 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| | | || || | || || ||||| ||||||| | ||||| || || | Sbjct 554186 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGG 554127 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 |||| ||||| || || |||||||| |||||| || | || || | || | Sbjct 554126 GAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554067 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | |||||| || || | |||||||| ||||||||||| Sbjct 554066 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| ||||||||||| | | ||| | |||| || | || || ||| Sbjct 554898 GTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTCTAATTGTTTTCCG 554839 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| | ||||| || || ||||| ||||| || || |||||||| ||| Sbjct 554838 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTT 554779 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || || || | || | |||||| || || | ||| Sbjct 554778 ACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTT 554719 Query 64427 TTTACGAAAATTTGCAT 64443 ||||| ||||||||||| Sbjct 554718 TTTACAAAAATTTGCAT 554702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATC-TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG 64274 ||| || || || | |||| |||| || | || ||||| ||||| |||||||| || | Sbjct 553561 ACCACCTCGTAAACGTAAG-ACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGG 553503 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| | |||| || | || || ||||| ||||||| | ||||| ||||| | Sbjct 553502 ACAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGG 553443 Query 64335 GAATTCCTTCTTTTTCTTGTATTTT 64359 |||| |||||||| ||||||||||| Sbjct 553442 GAATACCTTCTTTATCTTGTATTTT 553418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644625124320