Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq27 140 3e-28 >seq27 Length=1720986 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | || ||||| |||||||| || |||||| | |||| | ||| Sbjct 554001 AAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCC 553942 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || ||||||||||| ||| | || | || |||||| || || ||||| |||||||||||| Sbjct 553941 TCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCT 553882 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || ||||| ||| | ||| | |||||||| ||||| || || | || | || Sbjct 553881 TGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTC 553822 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| |||||||||||||||||||| Sbjct 553821 TTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | || ||||| |||||||| || |||||| | |||| | ||| Sbjct 554457 AAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCC 554398 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || ||||||||||| ||| | || | || |||||| || || ||||| |||||||||||| Sbjct 554397 TCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCT 554338 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || ||||| ||| | ||| | |||||||| ||||| || || | || | || Sbjct 554337 TGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTC 554278 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| |||||||||||||||||||| Sbjct 554277 TTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | || ||||| |||||||| || |||||| | |||| | ||| Sbjct 554685 AAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCC 554626 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || ||||||||||| ||| | || | || |||||| || || ||||| |||||||||||| Sbjct 554625 TCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCT 554566 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || ||||| ||| | ||| | |||||||| ||||| || || | || | || Sbjct 554565 TGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTC 554506 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| |||||||||||||||||||| Sbjct 554505 TTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | || ||||| |||||||| || |||||| | |||| | ||| Sbjct 553773 AAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCC 553714 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || ||||||||||| ||| | || | || |||||| || || ||||| |||||||||||| Sbjct 553713 TCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCT 553654 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || ||||| ||| | ||| | |||||||| ||||| || || | || | || Sbjct 553653 TGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTC 553594 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || |||||||||||||| Sbjct 553593 TTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45129 AACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCG 45188 || |||| ||| | || ||||| |||||||| || |||||| | |||| | ||| Sbjct 554229 AAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCC 554170 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || ||||||||||| ||| | || | || |||||| || || ||||| ||||| || || Sbjct 554169 TCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCC 554110 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || ||||| ||| | ||| | |||||||| ||||| || || | || | || Sbjct 554109 TGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTC 554050 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| |||||||||||||||||||| Sbjct 554049 TTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || |||||||||||||| || |||||| | |||| | || || ||||||||||| Sbjct 554898 GTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTCTAATTGTTTTCCG 554839 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | || | || |||||| || || ||||| ||||| || || || ||||| ||| Sbjct 554838 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTT 554779 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | |||||||| ||||| || || | || | || || || ||||| ||| Sbjct 554778 ACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTT 554719 Query 45324 TTTACAAAAATTTGCAT 45340 ||||||||||||||||| Sbjct 554718 TTTACAAAAATTTGCAT 554702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || |||||||||||||| || || ||| | |||| | || || ||||||||||| Sbjct 553530 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCCTCTAATTGTTTTCCG 553471 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | || | || |||||| || || ||||| |||||||||||||| ||||| ||| Sbjct 553470 GCGAAAATGAGTCTTTGCTGATCGGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTT 553411 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTC 45295 | ||| | |||||||| ||||| || || Sbjct 553410 ACATTTTCAATCGTGTCGGATGACTCTACATC 553379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003041798880