Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq27 125 2e-23 >seq27 Length=1720986 Score = 125 bits (138), Expect = 2e-23 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| | ||| | || || |||||||||| |||||| || | ||| || ||||| || || Sbjct 554911 GACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTC 554852 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 | || ||||||||||| ||||| | ||||| || || ||| ||||| ||||| Sbjct 554851 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTG 554792 Query 199540 AATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCT 199598 || ||| |||| || ||| | ||||| | || ||||||||||| ||||| |||| Sbjct 554791 TAT-TTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCT 554733 Query 199599 TACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || ||||| ||||||||||| Sbjct 554732 TTCCCGTTAGGGTTTTTACAAAAATTTG 554705 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| |||||| || | ||| || |||||||| || | || |||||| Sbjct 553758 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 553699 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| ||||| | ||||| || || ||| |||||| || || || ||| |||| Sbjct 553698 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTAT-TTTAGCTTT 553640 Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | ||||| | || ||||||||||| ||||| ||||| ||||| || || Sbjct 553639 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 553580 Query 199612 TTTCACAAAAATTTG 199626 |||||||||||||| Sbjct 553579 CTTCACAAAAATTTG 553565 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| |||||| || | ||| || |||||||| || | || |||||| Sbjct 553986 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 553927 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| ||||| | ||||| || || ||| |||||| || || || ||| |||| Sbjct 553926 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTAT-TTTAGCTTT 553868 Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | ||||| | || ||||||||||| ||||| ||||| ||||| || || Sbjct 553867 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 553808 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 553807 TTTTACAAAAATTTG 553793 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| |||||| || | ||| || |||||||| || | || |||||| Sbjct 554214 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 554155 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| ||||| | ||||| || || ||| ||||| ||||| || ||| |||| Sbjct 554154 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTAT-TTTAGCTTT 554096 Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | ||||| | || ||||||||||| ||||| ||||| ||||| || || Sbjct 554095 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 554036 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 554035 TTTTACAAAAATTTG 554021 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| |||||| || | ||| || |||||||| || | || |||||| Sbjct 554442 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 554383 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| ||||| | ||||| || || ||| |||||| || || || ||| |||| Sbjct 554382 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTAT-TTTAGCTTT 554324 Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | ||||| | || ||||||||||| ||||| ||||| ||||| || || Sbjct 554323 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 554264 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 554263 TTTTACAAAAATTTG 554249 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||||| |||||| || | ||| || |||||||| || | || |||||| Sbjct 554670 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 554611 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| ||||| | ||||| || || ||| |||||| || || || ||| |||| Sbjct 554610 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTAT-TTTAGCTTT 554552 Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | ||||| | || ||||||||||| ||||| ||||| ||||| || || Sbjct 554551 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 554492 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 554491 TTTTACAAAAATTTG 554477 Score = 100 bits (110), Expect = 7e-16 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| | ||| | || || |||||||||| ||||||||| | ||| || ||||| || || Sbjct 553543 GACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCCTC 553484 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 | || ||||||||||| ||||| | ||||| || || ||| |||||| || || Sbjct 553483 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGGGAATACCTTCTTTATCTTG 553424 Query 199540 AATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCT 199598 || ||| |||| || ||| | ||||| | || ||||||||||| ||||| |||| Sbjct 553423 TAT-TTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCT 553365 Query 199599 TACC 199602 | || Sbjct 553364 TTCC 553361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921177061876