Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq27 89.7 6e-13 >seq27 Length=1720986 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| |||||| || |||| || || || ||||||||||| ||||| ||||| Sbjct 554928 CCACCTCGTAAACGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGAC 554869 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | |||| || | || || |||||||| || | | ||||| || | || Sbjct 554868 AAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGA 554809 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| || || || | | | | ||||||| || || ||| Sbjct 554808 ATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACA 554749 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || ||||| || ||||| ||||| |||||||| Sbjct 554748 TCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238202166560