Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq27 120 3e-22 seq19 87.8 2e-12 >seq27 Length=1720986 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || ||||| || ||||||||| | || || ||| | || Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | |||| ||||| | ||||| || || |||||| | || || Sbjct 554762 GACACGATTGAAAATG-TAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCA 554820 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | ||||||| ||| || ||||| | || |||| | ||| | ||| ||||| Sbjct 554821 GCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACAA 554880 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || | || ||||| | ||||| |||| || Sbjct 554881 CATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGG 554928 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || ||||| || ||||||||| | || || ||| | || Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | |||| ||||| | || ||||| || |||||| | || || Sbjct 553850 GACACGATTGAAAATG-TAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCA 553908 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | ||||||| ||| || ||||| | || || | | ||| | ||| ||||| Sbjct 553909 GCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAA 553968 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || | ||||| || | ||||| |||| || Sbjct 553969 CATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554016 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || ||||| || ||||||||| | || || ||| | || Sbjct 554018 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554077 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | |||| ||||| | ||||| || || |||||| | || || Sbjct 554078 GACACGATTGAAAATG-TAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCA 554136 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | ||||||| ||| || ||||| | || || | | ||| | ||| ||||| Sbjct 554137 GCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAA 554196 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || | ||||| || | ||||| |||| || Sbjct 554197 CATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554244 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || ||||| || ||||||||| | || || ||| | || Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | |||| ||||| | || ||||| || |||||| | || || Sbjct 554306 GACACGATTGAAAATG-TAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCA 554364 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | ||||||| ||| || ||||| | || || | | ||| | ||| ||||| Sbjct 554365 GCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAA 554424 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || | ||||| || | ||||| |||| || Sbjct 554425 CATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554472 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| || ||||| || ||||||||| | || || ||| | || Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | |||| ||||| | || ||||| || |||||| | || || Sbjct 554534 GACACGATTGAAAATG-TAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCA 554592 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | ||||||| ||| || ||||| | || || | | ||| | ||| ||||| Sbjct 554593 GCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAA 554652 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || | ||||| || | ||||| |||| || Sbjct 554653 CATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554700 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || ||||| || ||||||||| | || || ||| | || Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||| | | |||| ||||| | || ||||| || |||||| | || || Sbjct 553622 GACACGATTGAAAATG-TAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCA 553680 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | ||||||| ||| || ||||| | || || | | ||| | ||| ||||| Sbjct 553681 GCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAA 553740 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || | ||||| || | ||||| |||| || Sbjct 553741 CATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 553788 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGAAAA 38329 || || ||||||||| | || || ||| | |||||| | || ||| | | |||| || Sbjct 553361 GGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAATG-TAAAAGCTAA 553419 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 ||| | || ||||| || |||||| |||| || || | ||||||| ||| || ||||| Sbjct 553420 AATACAAGATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATTTTCGCCGGAAAACA 553479 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 | || |||| | ||| | |||||||||||||||||||||| | || | || || Sbjct 553480 ATTAGAGGACGGAAGAACCTTGTCCGACTACAACATCCAAAAGGAATCCACCTTACACTT 553539 Query 38450 GGTGCTGCGTTTGAGAGGCGG 38470 || | ||||| |||| || Sbjct 553540 AGTCTTACGTTTACGAGGTGG 553560 >seq19 Length=2400328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 38232 CTCTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGAC 38291 || |||| ||||||||| ||||||||||||| | || || |||||||||||| | || Sbjct 232712 CTTTTTACCAAAATGCAAGTATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGAT 232771 Query 38292 GTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAAT 38350 || ||||| |||| | | | || | ||||| |||||| || || || ||||| Sbjct 232772 GTGGAGGCATCCGAAACGATTAGGAATG-TTAAATCAAAAATTGAGGATAAGGAAGGAAT 232830 Query 38351 TCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 38410 || | || |||||| |||| || || | || || ||| |||| || | | | Sbjct 232831 CCCACCTGATCAACAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGT 232890 Query 38411 CAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||||||| ||||| | || |||| ||||| Sbjct 232891 GGCTGACTACAACATCCAGAAGGAGTCCACCTTGCACTTGGT 232932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172624939520