Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq23 176 2e-38 seq18 134 5e-26 seq25 131 7e-25 seq27 118 4e-21 seq24 98.7 4e-15 seq19 91.5 6e-13 >seq23 Length=1360573 Score = 176 bits (194), Expect = 2e-38 Identities = 465/701 (66%), Gaps = 18/701 (3%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || ||||| ||||| ||||||| ||| || || || || | ||| | |||| Sbjct 569061 GCCATCGGTATTGACCTTGGTACCACCTATTCCTGCGTCGGAGTATGGAGAAACGAAAAT 569002 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 ||||| || || || |||||||| ||| |||| ||||| || | || || || Sbjct 569001 GTAGATATCATTGCCAATGACCAGGGAAACAGAACCACTCCCTCCTATGTTGCCTTCACT 568942 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAA-TGGTAAATTCAAATGCCAAA 451090 || | || || || | || | || ||||| | ||| ||| || || | || Sbjct 568941 GACACGGAGAGGCTAATCGGAGATGCCGCTAAGAACCAAGTGGCAAGG---AACCCAGAA 568885 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 ||||| || | |||||||| | |||||||| | | || ||| | |||| || Sbjct 568884 AACACTGTTTTCGATGCTAAGAGGTTAATTGGAAGGAAGTTCACTGAATCTTCTGTGCAG 568825 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAA----AGGAAAGCCCTAT-A 451205 | || | ||| || | | | || |||||| | || | || || | Sbjct 568824 AGCGATATGAAACACTGGCCCTTTACCGT--TAAATCCGGTGTTGATGAGAAACCCATGA 568767 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 || |||| | ||| |||| || | ||| ||| || |||||||| || ||||||| Sbjct 568766 TTGAAGTGAGCTATCAAGGAGAGAAGAAATTATTTCACCCCGAAGAAATCTCTTCTATGG 568707 Query 451266 TTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || | ||| |||||||| | || ||| | | || | | | ||||| Sbjct 568706 TT-TTGCAAAAGATGAAAGAGAATGCCGAAGCCTTCTTAGGAAAGTCTATAAAAAATGCA 568648 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || || || || |||||||| |||||| ||||| ||||||| || || || ||||| Sbjct 568647 GTCATCACCGTCCCAGCTTATTTTAATGATTCACAAAGGCAAGCCACCAAGGACGCAGGT 568588 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 ||||||||||| |||||| | |||| ||||| || || || ||||||||| | ||| Sbjct 568587 ACCATTGCTGGTTTGAATGTTATGAGAATCATTAACGAGCCAACCGCAGCTGCTATTGCA 568528 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 ||||| || || ||||| || | ||||| || ||| | | || ||| |||| Sbjct 568527 TATGGTCTTCACAA---AAAAGGAAAGGGTGAAAAGAACATTCTGATCTTCGATCTTGGA 568471 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 ||||||||| ||| || | ||| | ||||||||||| | || ||||| ||||| Sbjct 568470 GGAGGAACTTTCGATGTATCCCTCCTTACTATTGAAGATGGAATTTTCGAAGTGAAGGCT 568411 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| || ||||| | ||||| |||||| |||| || Sbjct 568410 ACAGCTGGAGACACTCACTTGGGAGGAGAAGATTTTGACAA 568370 >seq18 Length=2187873 Score = 134 bits (148), Expect = 5e-26 Identities = 228/330 (69%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||||||||||| ||| | || | || ||| | || || || || Sbjct 1436952 AAAATGAAAGAAACAGCTGAAAATTACTTGGGAAGGAAAGTACACCAAGCTGTTATCACA 1437011 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || |||||||| |||||| ||||| ||||||| || || || |||||| | ||||| Sbjct 1437012 GTACCTGCTTATTTTAATGATTCACAAAGGCAAGCCACCAAGGACGCAGGAAAAATTGCA 1437071 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||||| |||| || ||||||||||| || || |||||||| ||| |||||| |||| || Sbjct 1437072 GGTTTGGATGTGCTCCGAATTATTAACGAGCCAACAGCAGCGGCTTTAGCATTTGGATTA 1437131 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | ||||| | || | ||| ||| || | |||||| || || || || Sbjct 1437132 G-------AAAAG--AGCGACGGAAAGGTAATTGCCGTTTATGATTTAGGAGGTGGTACC 1437182 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||| ||| | | |||| | || || |||||||| ||||| || ||||| Sbjct 1437183 TTTGACGTTTCCATTTTGGAAATTTTGGGAGGTGTTTTTGAAGTTAAGGCGACGAATGGA 1437242 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGAT 451603 |||| |||||||| |||||| ||||| Sbjct 1437243 AATACATCCCTAGGAGGAGAAGATTTTGAT 1437272 >seq25 Length=1531272 Score = 131 bits (144), Expect = 7e-25 Identities = 285/424 (67%), Gaps = 11/424 (3%) Strand=Plus/Plus Query 451181 GTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA-ACTAAAACTTT 451239 ||||| || ||||||| || |||| |||| | ||||||| || | | || || Sbjct 712277 GTAAACCAGGAAGGAAAACCAAATATAAGAGTACAA-ATAAAGGATAAGAAGACGACCTT 712335 Query 451240 TGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATA 451299 ||| || ||| |||| | |||||| | ||||||||||||| || || | Sbjct 712336 TGCGCCAGAACAAATCAGTGCCATGGTTTTGGAAAAAATGAAAGAAATTGCTCAATCGTT 712395 Query 451300 TATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACA 451359 | | || ||||||| | || || ||||||| || ||||| |||||||| ||||| Sbjct 712396 TTTGGGAAAGCCAGTTAAGAACGCTGTCGTTACTGTGCCAGCTTACTTCAATGACGCACA 712455 Query 451360 ACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAA 451419 | |||||||| || ||||||||| ||||| |||||||| || | || ||||| || Sbjct 712456 GAGACAAGCAACGAAGGATGCAGGAACCATTGCAGGTTTAAACATTGTACGTATTATAAA 712515 Query 451420 TGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaa 451479 ||| || || ||||| ||| | || || ||| | ||| | ||| |||||| | Sbjct 712516 TGAGCCAACCGCAGCAGCTTTGGCTTACGGA-TTGGACA--------AAAAAGAAGAGAC 712566 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGA 451539 | || || || | ||||| || ||||||||| ||| || | ||| || || Sbjct 712567 GAGCATCTTGGTCTACGATTTAGGAGGAGGAACTTTCGATGTGTCCATTCTTGTGATCGA 712626 Query 451540 AGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATAT 451599 |||| || ||||| || | || || || ||||||| ||||||| ||||| | Sbjct 712627 CAATGGTGTGTTTGAGGTTTACGCTACAGCAGGAAATACTCACTTAGGAGGAGAAGACTT 712686 Query 451600 TGAT 451603 |||| Sbjct 712687 TGAT 712690 Score = 96.9 bits (106), Expect = 1e-14 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 420807 AGTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAA 420866 |||||| ||||||| ||| | |||||| || | || | | ||| |||||||| || || Sbjct 408981 AGTAAAAACAACAGATTTGGCAGGCATGTTAATTCCCATGGCAAAGGTTTCAGTCGCAAA 408922 Query 420867 CAAAACTTTAATTAAtttttttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926 ||| | ||||||||| ||| ||| |||| ||||| ||||||||||| || ||||| | Sbjct 408921 CAATATTTTAATTAACCCTTTGGAAAAAAGGATTTCCACAATTTCTTTCAATATAGGTAG 408862 Query 420927 TATACCAGAATGATGATATGCCA 420949 || ||| ||||| ||| ||| Sbjct 408861 TAACCCACTGTGATG-TATTCCA 408840 >seq27 Length=1720986 Score = 118 bits (130), Expect = 4e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || || || || || | ||||| || ||||| Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 553850 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553909 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | |||||| | || |||||| | || ||||||||||| ||| | ||||| || Sbjct 553910 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553969 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 || | || || | || | || ||||| ||| Sbjct 553970 ATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554002 Score = 118 bits (130), Expect = 4e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || || || || || | ||||| || ||||| Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 554306 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554365 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | |||||| | || |||||| | || ||||||||||| ||| | ||||| || Sbjct 554366 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554425 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 || | || || | || | || ||||| ||| Sbjct 554426 ATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554458 Score = 118 bits (130), Expect = 4e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || || || || || | ||||| || ||||| Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 554534 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554593 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | |||||| | || |||||| | || ||||||||||| ||| | ||||| || Sbjct 554594 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554653 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 || | || || | || | || ||||| ||| Sbjct 554654 ATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554686 Score = 114 bits (126), Expect = 5e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || || || || || | ||||| || ||||| Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 553622 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553681 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | |||||| | || |||||| | || ||||||||||| ||| | ||||| || Sbjct 553682 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553741 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 || | || || | || | || ||||| ||| Sbjct 553742 ATCCAAAAAGAATCCACCTTACATTTAGTCTTA 553774 Score = 114 bits (126), Expect = 5e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || || || || || | ||||| || ||||| Sbjct 554018 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554077 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| ||||| || || |||||||| ||||| |||||||| Sbjct 554078 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554137 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | |||||| | || |||||| | || ||||||||||| ||| | ||||| || Sbjct 554138 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554197 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 || | || || | || | || ||||| ||| Sbjct 554198 ATCCAAAAAGAATCCACCTTACATTTAGTCTTA 554230 >seq24 Length=1435464 Score = 98.7 bits (108), Expect = 4e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 496977 TGGGATTTATATaaaaaaaTGGAAGCAGCTTTTTGGACAGCTGAAGAAATAGATTGGTCT 497036 |||||||| || || ||| |||||| | || ||||||||||| ||||| || | ||| Sbjct 1240812 TGGGATTTTTACAAGAAAGCGGAAGCCTCCTTCTGGACAGCTGAGGAAATTGACTTGTCC 1240871 Query 497037 AAAGATAAACATGATTTTAAAAAATTAAATCAAGATGAACAACGATTTATTAAATATGTA 497096 | ||| | | ||||| ||||||||||| || ||||| ||| || || ||| |||| Sbjct 1240872 AGCGATTTAAAAGATTTCGAAAAATTAAATGAAAATGAAAAACACTTCATAAAACATGTG 1240931 Query 497097 TTAGCAtttttttCGGCAAGTGATACAATTGT 497128 || || |||||| | || |||||| ||| || Sbjct 1240932 TTGGCCTTTTTTGCAGCCAGTGATGGAATAGT 1240963 >seq19 Length=2400328 Score = 91.5 bits (100), Expect = 6e-13 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 391059 TTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATT 391118 ||||| |||||| | || || ||||| || || || ||||| || |||| || | ||| Sbjct 232733 TTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCATCCGAAACGATT 232792 Query 391119 --GAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTT 391176 ||| | ||||| ||||||| | |||||||||||||| || ||||||||||| | Sbjct 232793 AGGAA--TGTTAAATCAAAAATTGAGGATAAGGAAGGAATCCCACCTGATCAACAGAGGC 232850 Query 391177 TAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATA 391236 |||| | ||||| || || | || |||| || | |||| || || || || | | Sbjct 232851 TAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTACAACATCCAGA 232910 Query 391237 AGGATGCAACACTTCACTTAGTA 391259 |||| | || | ||||| ||| Sbjct 232911 AGGAGTCCACCTTGCACTTGGTA 232933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717691211024