Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq23 392 4e-104 seq25 140 4e-28 seq24 102 1e-16 seq18 100 4e-16 >seq23 Length=1360573 Score = 392 bits (434), Expect = 4e-104 Identities = 1064/1603 (66%), Gaps = 44/1603 (3%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || ||||| ||||| | ||||| ||||| |||||| || Sbjct 567481 TTCATCCTCTGCTTTGTATTTTTCAGCATCGTTCACCATACGGTCAATTTCTTCTGGGGA 567540 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTT 6686 ||||| ||||| ||||||||||| ||||| | ||| | ||| || | | ||| || Sbjct 567541 CAATCTTCCCTTGTCATTCGTAATGGTAATATGGTTCTGCTTT-CCAGTAGACTTTTCAA 567599 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 ||||| | ||||| | |||||||| ||||||| || || | || | ||||||||| Sbjct 567600 CAGCAGTGACATTAAGGATACCATTGGCATCAATGTCAAAGGTAACTTCAATTTGTGGAA 567659 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || || || | ||| ||||| || | |||| |||| |||| ||||| | Sbjct 567660 CTTTTCTTGGGGCAGGTGGGATACCGTCTAGGTGAAATTTACC---TAAAAGGTTATT-G 567715 Query 6807 TCGCCTTCTTACG-----TTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATC 6861 || | | ||| | ||| ||||| || |||| || ||| | ||||| ||||| Sbjct 567716 TC-CTTGGTTAGGGCTCTTTCTCCTTCGTACACTTGGATCAACACTCCTGGTTGGTTATC 567774 Query 6862 TTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAAC 6921 || | ||||||||| ||||| | || ||||| ||||||||| ||| | Sbjct 567775 AGCATAGGTAGTGAAGATTTGACTCTTCTTGGCGGGGATCGTGGTATTTCTCTCAATGAG 567834 Query 6922 CGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGT-CACGTCCAAGA 6980 | |||||||| || || ||||| | ||||| || | ||| | ||| || |||| Sbjct 567835 CTTGGTCATAACTCCTCCTGCGGTTTCCAAACCAAGGGATA-AGGAGCACACATCTAAGA 567893 Query 6981 GTAACAGGTCTTGAACAG-ATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTC 7039 | |||| |||||| || | ||| | | | |||| | || ||||| ||||| || | Sbjct 567894 GCAACAAGTCTTGTACGGCATTGGATTGGT-CACCGGACAAAATGGCTGCTTGCACTGCA 567952 Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAG--TTCTTTACCGTTAA 7097 || || ||||| || || ||||| ||||| || | | | ||| ||| || ||||||| Sbjct 567953 GCACCATATGCAACGGCTTCATCAGGGTTGATTGATCTG--CAGGCTTCCTTTCCGTTAA 568010 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | | ||| | | | ||||||||| || |||| ||| || ||||| || | ||| | Sbjct 568011 AGAATTCCTTAATGAGTGTTTGAATTTTGGGAATTCTTGTGGAACCACCAACAAGAACAA 568070 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGG---TT 7214 ||| | ||| || || || ||| ||| ||| | || || ||||| | Sbjct 568071 CTTCGTGCACGCTCTTCTTGTCCATCATTGCATCTTTCAACACCTTCTCAACAGGGATTA 568130 Query 7215 CCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATG 7274 | || | |||||| | || ||||| | ||||||||| | || | | | | | | Sbjct 568131 GCGTA---TCACGGAAGTAATCGATACATAATTCCTCAAATCTGGCTCTGCTTACTGTTA 568187 Query 7275 TATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAG 7334 | | | || | || || | | ||||||||||| ||||| | ||||| | || | Sbjct 568188 CACTGTAGTCGATACCTTCAAAGAGGGAATCAATTTCGATGGTGGCTTGTGTGGAGGAGG 568247 Query 7335 ATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTAC 7394 | || || || || || | ||||||| |||||||| | | | || | || Sbjct 568248 ACAAGGTACGTTTGGCTCTCTCACACTGAGTTCGTAATCTTCTCAAAGCTCTGCTATTTT 568307 Query 7395 CGGAAATATCTTT--CT-TATGTTTACGTTTAAACTCTTCAG-AGAAGTGTCGAAGGAGT 7450 ||| | ||| || || ||| ||| | |||||| |||||| | || || || | | Sbjct 568308 TGGATAAATCCTTTCCTCTATTTTTTCTTTTAAAATCTTCAACACAAAAGTTGACCAA-T 568366 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 || || |||||||| || |||||||| || || || || || || || ||||| || Sbjct 568367 CTGTTGTCAAAATCTTCTCCTCCCAAGTGAGTGTCTCCAGCTGTAGCCTTCACTTCGAAA 568426 Query 7511 ATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATG 7570 || || ||||||| | | | || ||||| || || || || || || || || || Sbjct 568427 ATTCCATCTTCAATAGTAAGGAGGGATACATCGAAAGTTCCTCCTCCAAGATCGAAGATC 568486 Query 7571 AGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 || | |||| | || | | | || || | ||||| || || ||||| || || ||| Sbjct 568487 AGAATGTTCTTTTCACCCTTTCCTTTTTTGTGAAGACCATATGCAATAGCAGCTGCGGTT 568546 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || || ||||| || | | | |||| |||||||| || | || || || || ||| Sbjct 568547 GGCTCGTTAATGATTCTCATAACATTCAAACCAGCAATGGTACCTGCGTCCTTGGTGGCT 568606 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT----GACTTT 7746 || | ||| ||||| ||||| || || ||||| || | ||| || | | |||||| Sbjct 568607 TGCCTTTGTGAATCATTAAAATAAGCTGGGACGGTGATGACTGCATTTTTTATAGACTTT 568666 Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCT 7805 | || ||| | | ||| || | |||||||| ||| | || |||||| || || || | Sbjct 568667 CCTA---AGA-AGGCTTCGGCATTCTCTTTCATCTTTTGCAA-AACCATAGAAGAGATTT 568721 Query 7806 CTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG 7865 |||| | ||| |||| | || || | | | ||||||||||||||||| || Sbjct 568722 CTTCGGGGTGAAATAATTTCTTCTCTCCTTGATAGCTCACTTCAATCATGGGTTTCTCAT 568781 Query 7866 CAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCG 7925 || |||||| |||| || | | ||| | |||||||||| || || || | Sbjct 568782 CAACACCGGATTTAACGGTAAAGGGCCAGTGTTTCATATCGCTCTGCACAGAAGATTCAG 568841 Query 7926 AAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTG 7985 ||||| ||||| || | | ||| ||||| ||||| ||||||| |||||| | || Sbjct 568842 TGAACTTCCTTCCAATTAACCTCTTAGCATCGAAAACAGTGTTTTCTGGGTTCCTTGCCA 568901 Query 7986 TTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACG 8045 ||||||||| || || || ||||| || | || | | | || || || || || | Sbjct 568902 CTTGGTTCTTAGCGGCATCTCCGATTAGCCTCTCCGTGT---CAGTGAAGGCAACATAGG 568958 Query 8046 ATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGA 8105 | || || |||| || || ||||| || ||||| || ||||| |||||| ||| | Sbjct 568959 AGGGAGTGGTTCTGTTTCCCTGGTCATTGGCAATGATATCTACATTTTCGTTTCTCCATA 569018 Query 8106 CGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | |||||||| ||||| || || || | ||||||||||| || Sbjct 569019 CTCCGACGCAGGAATAGGTGGTACCAAGGTCAATACCGATGGC 569061 >seq25 Length=1531272 Score = 140 bits (154), Expect = 4e-28 Identities = 413/630 (66%), Gaps = 19/630 (3%) Strand=Plus/Minus Query 6539 TTCTTCGCCTCGACCTTTTTCGCGTACTTT-TCATCTTCATCTTTATACTTTTCCGCATC 6597 || || || ||||| |||||| || | || | ||| ||||| | | ||||| ||||| Sbjct 713598 TTTTTTGCTTCGAC-TTTTTCTCGGAGGTTCTTATCCTCATCCGCAAATTTTTCTGCATC 713540 Query 6598 TTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAAT 6657 | | ||| || || || | ||| || || | || || |||||||||||||| ||||| Sbjct 713539 GTTAATCATTTTCTCGATTTGTTCCTTAGACAGCCTTCCTTTATCATTCGTAATTGTAAT 713480 Query 6658 --CTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCA 6715 |||| | ||| || | | |||||||| || ||| | | ||| |||||| | Sbjct 713479 TCCTTTACT--TTTTCCTGTACCTTTATCTTCTGCTTCTACGTGGAGAATTCCATTTTTA 713422 Query 6716 TCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTT 6775 || || ||| | || | ||||| || ||| ||| |||| | ||| || || || Sbjct 713421 TCTACTGTGAATGTAACTTCAATTTTGGGGACACCTCTCTGTGCTGGTGGGATTCCTGTG 713362 Query 6776 AAATCAAATGTACCAAGTAAACTGTTATCCGTCGCC--TTCTTACGTTCACCTTCATAGA 6833 | || ||| | || | | | ||| ||| | | | || | |||||||||| | | Sbjct 713361 AGTTCGAATTTTCCTAAAAGATGGTTGTCCTTGGTTAATGCT--CTTTCACCTTCAAATA 713304 Query 6834 CTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAG 6893 ||| ||| ||| || ||||| || ||||| || || ||| ||||| |||||| | Sbjct 713303 CTTGGATTAACACAGCTGGTTGGTTGTCTTGGTAGGTAGAAAAGGTTTGTGATTTCTTCG 713244 Query 6894 ATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTC 6953 || || || ||||| ||| | | ||||| ||||| || | ||||| | || Sbjct 713243 TGGGGATAACTGTGTTTCTTTTAATGAGTTGTGTCATGATACCTCCAACGGTTTCTATTC 713184 Query 6954 CAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCAC 7013 | | | ||| || || || || | | | || ||||| | |||| ||| | Sbjct 713183 CTAACGTCAGTGGAGTAACATCTAGCAAGACCACATCTTGTA---ATTC------TTCTC 713133 Query 7014 CCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCG 7073 || | || | ||||| | | || || || || || || ||||| ||||| || Sbjct 713132 CCAAAATAATACCAGCTTGAATAGCAGCACCATAGGCTACAGCTTCATCTGGGTTGATAC 713073 Query 7074 TTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTC 7133 | |||| |||| ||||| |||||| | || || |||||||||||||| ||||| | Sbjct 713072 CTCTATTGGGTTCCTTACCATTAAAAAATTCTTTTATAATTTGTTGAATTTTGGGGATAC 713013 Query 7134 GTGTCGATCCACCGACCAAAACGATTTCAT 7163 | || ||||| || || | ||| || |||| Sbjct 713012 GAGTTGATCCTCCTACAAGAACAATCTCAT 712983 Score = 109 bits (120), Expect = 7e-19 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||||| |||| || || || | ||||| || | ||| || || ||||| ||||| ||| Sbjct 712568 TCGTC-TCTTCTTTTTTGTCCAATCCGTAAGCCAAAGCTGCTGCGGTTGGCTCATTTATA 712510 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| | | ||| | || ||||| ||| | ||||| ||||| ||||||| || | Sbjct 712509 ATACGTACAATGTTTAAACCTGCAATGGTTCCTGCATCCTTCGTTGCTTGTCTCTGTGCG 712450 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 || || ||||| || || || || ||||| |||| | | ||| ||| || | | ||||| Sbjct 712449 TCATTGAAGTAAGCTGGCACAGTAACGACAGCGTTCTTAACTGGCTTTCCCAAAAACGAT 712390 Query 7763 TCCGCGATATCTTTCATTTT 7782 | || || ||||||||||| Sbjct 712389 TGAGCAATTTCTTTCATTTT 712370 >seq24 Length=1435464 Score = 102 bits (112), Expect = 1e-16 Identities = 340/518 (66%), Gaps = 16/518 (3%) Strand=Plus/Minus Query 115353 AAATTCTTGGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGG 115412 ||| ||| ||| | || ||||| ||||| || ||||| ||||| || | || Sbjct 1241354 AAAATCTGTGTGTAATCCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCC--- 1241298 Query 115413 AAGTAACCC--TCT-CTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATAT 115469 | ||||| ||| |||||| ||||||||||| ||||| ||||| || || || || Sbjct 1241297 ATGTAACTTGTTCTGCTTTTTAAACCAAAAAATGGCACAGAAACTTCCACTAAATAAAAT 1241238 Query 115470 ACCTTCAACACACGCAAAGGCTAATAAACGTTCAGCAAATGG--TCGTTTCTTATCAAAC 115527 ||| || ||||||||| |||| || | ||| ||||| | |||| || | | | | Sbjct 1241237 ACCCTCTACACACGCATTCGCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTT--ATC 1241180 Query 115528 CACTTCATAGCCCATTTCGCCTTTCTTTCGATACA-CGGAATTGTT-TGAATTGCTTCGA 115585 ||||| |||||| || || ||| ||| ||| |||| | ||| || | | Sbjct 1241179 CACTTGGCAGCCCACAGAGCTTTG--TTCTTCACAGCGGGGATGTTCTCAATAGCGTGAA 1241122 Query 115586 ATA-ATTGTTTCTTTTCGCTAGAATTTTTTATATACTTGTCTATGAGTTTACTGTACGTT 115644 ||| ||| |||| | | | || ||||| || |||||||| | || || || Sbjct 1241121 ATAGATTCATTCTCTCCT-TCTCATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTC 1241063 Query 115645 TCACCGTGTACCATTTCATTGTGAGATTGATAGGCATAAAATGATCGAGCCTCCGTAAGT 115704 || || | ||||| | | || ||| ||||||| |||||||| | | Sbjct 1241062 TCCGAATGAATATTTTCAACGGCAATCTGGAAGGAATAAAATTTCTTTGCCTCCGTTATT 1241003 Query 115705 TGTATTTCATCTGCAAAATTATTATTTATATTTTCAAAAACTATACCATCAGAACCAGCa 115764 || | || | ||| || | || |||||| || ||||| |||||| | ||| Sbjct 1241002 TGCACTTGGCGTAAAAATTTGCTCGCTAAATTTTCCAACACTATTCCATCACTGGCTGCA 1240943 Query 115765 aaaaaaGCTAAAATATATTTTATAAAATGTTTTTCATTATCACTTAATTCATTCCAATCA 115824 ||||| || || | || |||||| || ||||||||||| ||| |||||| | |||| Sbjct 1240942 AAAAAGGCCAACACATGTTTTATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCT 1240883 Query 115825 TCCATATCTTTGGAAAAGTCTATCTCTTCAGCGGTCCA 115862 | | ||| |||| ||||| || || ||||| ||||| Sbjct 1240882 TTTAAATCGCTGGACAAGTCAATTTCCTCAGCTGTCCA 1240845 >seq18 Length=2187873 Score = 100 bits (110), Expect = 4e-16 Identities = 228/335 (68%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 7450 TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA 7509 |||| ||| |||||||| || || | | ||||| || ||||| || |||||||| Sbjct 1437278 TCTCTGATCAAAATCTTCTCCTCCTAGGGATGTATTTCCATTCGTCGCCTTAACTTCAAA 1437219 Query 7510 GATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 | |||||| ||| | || | ||||| ||||| |||||||| || | ||| ||| Sbjct 1437218 AACACCTCCCAAAATTTCCAAAATGGAAACGTCAAAGGTACCACCTCCTAAATCATAAAC 1437159 Query 7570 GAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 | | | | | | || |||| | |||| || | || | || | |||||| || || Sbjct 1437158 G-GCAATTACCTTTC--CGTC---GCTCTTTTCTAATCCAAATGCTAAAGCCGCTGCTGT 1437105 Query 7630 TGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 ||| || |||||||| || || ||| | || || ||||| || | || || || || | Sbjct 1437104 TGGCTCGTTAATAATTCGGAGCACA-TCCAAACCTGCAATTTTTCCTGCGTCCTTGGTGG 1437046 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG-ACTTTC 7747 |||| | ||| ||||| ||||| || || || || || | || || | ||| |||||| Sbjct 1437045 CTTGCCTTTGTGAATCATTAAAATAAGCAGGTACTGTGATAACAGCTTG-GTGTACTTTC 1436987 Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 | || | || ||| || | ||||||||||| Sbjct 1436986 CTTCCCAAGTAATTTTCAGCTGTTTCTTTCATTTT 1436952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132577703520