Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq27 206 3e-48 >seq27 Length=1720986 Score = 206 bits (228), Expect = 3e-48 Identities = 1090/1718 (63%), Gaps = 38/1718 (2%) Strand=Plus/Plus Query 111529 GAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGAC 111588 |||| | | | | || ||| ||||| |||| ||| | || | | |||||||| || Sbjct 630948 GAGATTTCAATTATGATTACTTTGGATTCAAAACCTTGGAAAGATCCTACCTCCTTCGAA 631007 Query 111589 TGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTC--ATGCGGGTCGCGATCGGTAT 111646 | |||| | || || | ||||| |||| | | ||| | || | |||||||| Sbjct 631008 TAAATGGAAAGATTATTGAGAGACCACA--ACATCTACTGATGAGAGTATCCATCGGTAT 631065 Query 111647 CCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCC-GTGGTATGT 111705 |||| | |||| | || | || ||||| ||| | |||||| | | |||| | Sbjct 631066 CCATATTGGAGATCTGGAAAAAGCGTTAGAGACGTACCATCTGATGTCTCAGAAGTATTT 631125 Query 111706 TCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTC--CA- 111762 | | ||||||||||| ||| | ||||| |||| |||||||||||||||||||| || Sbjct 631126 T-ACGCACGCAACACCTACCTTGTTCAATTCTGGCACACCAAGACCCCAAATGTCTTCAT 631184 Query 111763 GTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTG 111822 ||| | |||| ||||| || | ||||| || | ||||||| || ||||| | Sbjct 631185 GTTTTCTCCT--TTGCATGAAATCA-GATTCGATTGAAGGCATTTTCGAGACTCTAAAAC 631241 Query 111823 AATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGG-GATGCACATCCATGATGTCAGA 111881 | || |||| || || ||||||||||| || | ||| | || ||| | ||| Sbjct 631242 AGTGCGCCCTGATTAGCAAAACAGCTGGTGGTATTGGAGTAGCA-GTACAGGATATTAGA 631300 Query 111882 GCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTA-TTCCAATGCT 111940 | | || ||| |||||||| || ||||| ||| | || |||| | |||||||| Sbjct 631301 GGACAAAATTCTTACATTAGAGGAACGAATGGAATATCCAACGG-ATTAGTACCAATGCT 631359 Query 111941 TCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCG---TCGCAAGGGATC 111997 | || ||||| | ||||| | |||||| |||||| ||| | | |||||||| Sbjct 631360 GAGAGTGTTTAATGATACAGCTAGATATGTAGACCAAGGTGGCGGAAAGAGGAAGGGATC 631419 Query 111998 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 112057 | ||||||| ||| | || || ||||| | ||||| | ||||| | || | ||| Sbjct 631420 TTTCGCAGTGTATATCGAACCGTGGCATTCAGATATTTTTGAGTTTTTGGATCTTCGTAA 631479 Query 112058 CAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAG 112116 || || || | || || | | || | ||||| |||| ||| | ||| | || | Sbjct 631480 AAATCATGGGAAGGAAGA-ACTAAGAGCTAGAGATCTTTTCTATGCTGTATGGGTACCTG 631538 Query 112117 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGG 112176 | || || ||||||||||| |||| | |||||| || | | || || | | Sbjct 631539 ACCTTTTTATGAAGAGAGTAAAGGAAAACCAAAATTGGACTTTGATGTGCCCGAATGAAT 631598 Query 112177 CACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGG 112236 || || | || | ||||| || || ||| || || ||| || |||| Sbjct 631599 GTCCAGGGTTAAGTGAGTCATGGGGTGCAGAATTCGAAAAGCTATATTTAAAATATGAGG 631658 Query 112237 AAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGT 112296 | || || || | || || | ||| ||| | ||| |||||||| || Sbjct 631659 AGGAGGGTATGGGTAAAAAAACAGTACTAGCACAAGATCTATGGTTTGCTATTCTGCAGA 631718 Query 112297 CTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTA 112356 ||| | || || || || || ||||| || || || | |||||| ||| | Sbjct 631719 GTCAGATAGAAACAGGGGTTCCGTACATGCTGTATAAGGATTCTTGTAACGCGAAGTCGA 631778 Query 112357 ATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTA 112416 ||||||| ||||| ||| ||| || || ||||| ||| || ||| | |||| || Sbjct 631779 ATCAAAAAAATTTAGGTACGATAAAATGTAGTAACCTGTGTTGTGAGATCATTGAATATA 631838 Query 112417 CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 112476 || ||| || ||| || |||||| | || || ||||| | ||| | ||| | Sbjct 631839 CATCACCAGACGAAGTGGCCGTATGTAACTTGGCTTCTATCGCGTTGTGCAAATTTGTCG 631898 Query 112477 ATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAA 112536 || ||| | || | ||| ||| | | || || ||||| |||| |||| | | || Sbjct 631899 ATGTAGATAAAAGGGAATTCAATTTTAAGAAGCTGTACGAAATTACAAAAATTATTACTC 631958 Query 112537 AAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTA 112596 ||| | || | | ||||| || |||| ||||| ||| || ||| ||| | Sbjct 631959 GGAACTTGGACCAAATAATTGAAAGGAATTACTACCCTGTTCAGGAAGCTGAGCGATCGA 632018 Query 112597 ATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTT 112656 | | ||||||| | || || ||| | || || || || | || || ||||| || Sbjct 632019 ACAAGAGACACAGACCTATAGGTATAGGAGTACAGGGATTGGCAGACACCTTCATGCTAC 632078 Query 112657 GTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAA 112716 | | || ||| ||| || || || || ||| | ||| | || || || |||| Sbjct 632079 TTAGATACCCATATGAATCAGATTCTGCAAAAGAATTAAATAAAAGAATTTTCGAAACAA 632138 Query 112717 TGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAA 112776 ||||| | || ||||| ||| | ||| |||||| | | | || || || |||| Sbjct 632139 TGTATTATGCTGCTCTGGAGATGTCCATGGAATTGGCACAAATATACGGACCTTACGAAA 632198 Query 112777 CCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG-----GAAGG 112831 ||| | ||||| ||||||| || || | ||||| || ||||||||| ||||| Sbjct 632199 CCTATCAGGGTAGTCCAGCTAGCCAGGGAATTCTTCAGTTCGATATGTGGAATGTGAAGG 632258 Query 112832 T-GAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTC 112890 | || | ||| | | |||||||| || || ||| || ||| | | || Sbjct 632259 TGGATAATAAG---TATTGGGACTGGGATAAACTGAAAGAAAAAATAAAGAAACACGGAT 632315 Query 112891 TTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTA 112950 | | || ||| | | || |||||||| || || || || |||| || | || | Sbjct 632316 TGAGAAATTCGCTTCTTTTAGCTCCAATGCCTACTGCTTCGACGTCACAGATTCTTGGCA 632375 Query 112951 ATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAG 113010 | ||||| | ||||||||| ||||||| ||||| || || | || |||| Sbjct 632376 ACAATGAGTCCTTTGAACCATACACGAGTAACATTTACTACAGGCGGGTTCTGAGTGGAG 632435 Query 113011 AGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCA 113070 | ||| | | || ||| || | || | |||||| || |||||| ||| Sbjct 632436 AATTTTTTGTGGTGAACCCCCACTTATTGAAGGACCTCTTCGATCGTGGTCTGTGGGATG 632495 Query 113071 AGGATATGAAG---GATCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGAT 113126 |||| |||||| | || | || | | ||| | | | ||| ||||| || Sbjct 632496 AGGACATGAAGCAACAGCTGATTGCACACAACGGAAG----CGTGCAATATATTAGCGAA 632551 Query 113127 ATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTC 113186 || || | || | ||| || | || || ||||||||||||||| |||| | || Sbjct 632552 ATCCCCAACGACTTGAAGGAGCTCTATAAAACTGTTTGGGAAATCAAGCAGAAGAACATC 632611 Query 113187 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCA 113224 ||||| ||||| || ||||| || ||||||||| || Sbjct 632612 ATTGATATGGCGGCCGATCGAGGCGCCTTCATTGACCA 632649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742182740160