Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq27 149 7e-31 >seq27 Length=1720986 Score = 149 bits (164), Expect = 7e-31 Identities = 556/856 (65%), Gaps = 17/856 (2%) Strand=Plus/Minus Query 110373 ACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGT 110432 ||| || || || |||||||| || | ||| || | ||||||||| |||||||| || Sbjct 631795 ACCTAAATTTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGGAAC 631736 Query 110433 ACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGC 110492 || ||||| |||| || ||||| || ||||| ||| || | || ||| Sbjct 631735 CCCTGTTTCTATCTGACTCTGCAGAATAGCAAACCATAGATCTTGTGCTAGTACTGTTTT 631676 Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 ||| | | ||| |||||||| || || || | | || ||||| || | Sbjct 631675 TTTACCCATACCCTCCTCCTCATATTTTAAATATAGCTTTTCGAATTCTGCACCCCATGA 631616 Query 110553 ATCAGAAAGACCCTTCGCCTTG--TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCA 110610 ||| | ||||| | || ||||| || | | | ||||||| |||| Sbjct 631615 CTCACTTA-ACCCTGGACATTCATTCGGG-CACATCAAAGTCCAATTTTGGTTTTCCTTT 631558 Query 110611 ACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGC 110669 || |||||||| || |||||||| | ||| | || ||||||| || | || || Sbjct 631557 ACTCTCTTCATAAAAAGGTCAGGTACCCATACAGCATAGAAAAGATCTCTAGCTCTTAGT 631498 Query 110670 CTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGG 110729 ||||| | || || || || || |||||||| || | ||||| || ||||| || Sbjct 631497 -TCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCACGG 631439 Query 110730 TTCGAGATAGACAGCGATGGATCCCTTACGACGACCCGCC----TGGTTAACATAGCGTG 110785 ||||| ||| || |||| |||||||| | | ||||| |||| ||||| | | Sbjct 631438 TTCGATATACACTGCGAAAGATCCCTTCCT-CTTTCCGCCACCTTGGTCTACATATCTAG 631380 Query 110786 CTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCC 110845 |||| |||| || || || ||||| || | | ||| | |||| ||||| || || | Sbjct 631379 CTGTATCATTAAACACTCTCAGCATTGGTACTAATCCGTTGGATATTCCATTCGTTCCTC 631320 Query 110846 TAATTCTGGACTTATTGGCACGAATGTCGTGGATATGC-ATACCAATACCACCCGCCCAC 110904 |||| || || | | | ||| || || | ||| | ||||||||||| || Sbjct 631319 TAATGTAAGAATTTTGTCCTCTAATATCCTGTAC-TGCTACTCCAATACCACCAGCTGTT 631261 Query 110905 TTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTG 110964 || ||||| | || |||| | | || || | |||| || ||||||||||||| || Sbjct 631260 TTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGATTTC 631201 Query 110965 TTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTA 111024 || || ||||| || |||||||| || || | || || || | |||||| | ||| Sbjct 631200 ATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGGTA 631141 Query 111025 GGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGG 111083 ||||| || || | || | || | || |||||| | ||| || || | || Sbjct 631140 GGTGTTGCGTGCGT-AAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTTC 631082 Query 111084 TACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGAT 111143 | |||| | || ||||| |||| |||| ||| | | || ||| || | || || Sbjct 631081 CAGATCTCCAATATGGATACCGATGGATACTCTCATCAGTAGATGTTGTGGTCTCTCAAT 631022 Query 111144 TAGCTTTCCATCAACACGCTGAAGGTA-ACTCTTCTCTAGGGTCTTGAGACCAAAGTATC 111202 | |||||||| | || | ||||| |||| || | ||| |||| |||||||| Sbjct 631021 AATCTTTCCATTTATTCGAAGGAGGTAGGATCTT-TCCAAGGTTTTGAATCCAAAGTAAT 630963 Query 111203 CAAAATCGAAATCACG 111218 || ||| |||||| || Sbjct 630962 CATAATTGAAATCTCG 630947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975793858400