Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 5e-14 >seq27 Length=1720986 Score = 93.3 bits (102), Expect = 5e-14 Identities = 179/258 (69%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 168440 TTTTGTGAAAATGTACCTCGTCTG-AGAAGCATCCTTACCACC---CATGAGACGCGTAC 168495 ||| || ||||||||||| | ||| ||||||||| || ||||| | | || ||| Sbjct 822328 TTTGGTAAAAATGTACCTAG-CTGCAGAAGCATCTTTTCCACCTTCCTTTCTAC---TAC 822273 Query 168496 CAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTT--GC 168553 ||||||||||||| ||||| | || ||| || || ||||| || | | |||| || Sbjct 822272 CAAATTGACCACATGGTTCTAAAAAGTTTATATTATTTGATCC--TACAAAGGTTTGGGC 822215 Query 168554 CAACTTAACAATCGTGTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTGTCCGC 168613 || |||| ||| || | ||||||| ||| ||||| ||||| ||| | || || Sbjct 822214 CATATTAATAATGGTTTGTTGTAAGGATGATTCTCCATGATGGTATGCACTATGTTCTGC 822155 Query 168614 GACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAGCAAGC 168673 | |||| | | ||||| |||||||| |||| ||| | ||| | | |||||| | Sbjct 822154 TATATATCCAACAAGTTGAGCCACCTTACACTCATTCTTTAAATTTCTTTTAAAGCAACC 822095 Query 168674 ATACATCACTTTCCTCTG 168691 ||| | || ||||| || Sbjct 822094 ATAGAGAACCTTCCTTTG 822077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980593506720