Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq27 87.8 1e-12 >seq27 Length=1720986 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || ||||| || || || | | ||| | |||| || | ||||||||||| || Sbjct 553753 TTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAA 553694 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| || | || | || || || || || || ||| || Sbjct 553693 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATT 553634 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || | ||| ||||| | ||| ||||| |||||||| || |||||||| Sbjct 553633 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCAC 553574 Query 34970 AAAGATCTGCATA 34982 ||| || |||||| Sbjct 553573 AAAAATTTGCATA 553561 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || ||||| || || || | | ||| | |||| || | ||||||||||| || Sbjct 554209 TTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAA 554150 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| || | || | || |||||||| || || ||| || Sbjct 554149 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATT 554090 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || | ||| ||||| | ||| ||||| |||||||| || || || || Sbjct 554089 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTAC 554030 Query 34970 AAAGATCTGCATA 34982 ||| || |||||| Sbjct 554029 AAAAATTTGCATA 554017 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||| | ||| ||| || || ||||| || || || | | ||| | | || Sbjct 554913 AAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCC 554854 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || | ||||||||||| || || |||| |||||| || | || | || |||||||| Sbjct 554853 TCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCC 554794 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || || ||| || | | |||| || | ||| ||||| | ||| ||||| Sbjct 554793 TGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTC 554734 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||||| || || || ||||| || |||||| Sbjct 554733 TTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 554701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633489218784