Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq27 206 3e-48 seq24 134 2e-26 >seq27 Length=1720986 Score = 206 bits (228), Expect = 3e-48 Identities = 952/1501 (63%), Gaps = 59/1501 (4%) Strand=Plus/Minus Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 |||||||||| || || | | | || || ||||| || |||||||| | || || Sbjct 632440 AAATTCTCCACTCAGAACCCGCCTGTAGTAAATGTTACTCGTGTATGGTTCAAAGGACTC 632381 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA-T 47448 ||| || |||| ||| || | || || || |||||||| | || | || |||| | | Sbjct 632380 ATTGTTGCCAAGAATCTGTGACGTCGAAGCAGTAGGCATTGGAGCTAA-AAGAAGCGAAT 632322 Query 47449 TTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAA-AGATCTGAT 47507 |||| | ||| | ||| | ||| | | ||| |||||| | | | || Sbjct 632321 TTCTCAATCCGTGTTTCTTTATTTTTTCTTTCAGTTTATCCCAGTCCCAATACTTATTAT 632262 Query 47508 GGAACA--ACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 | | |||||||| | ||| | ||||||||||| | || ||| ||| | || Sbjct 632261 CCACCTTCACATTCCACATATCGAACTGAAGAATTCCCTGGCTAGCTGGACTACCCTGAT 632202 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACA---ACTTGCTTCCAATGCACTAT 47622 | |||| ||||| ||||||| || || | ||| || || | |||| ||| || Sbjct 632201 AGGTTTCGTAAGGTCCGTATATTTGTGCCAATTC-CATGGACATC--TCCAGAGCAGCAT 632145 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGA---TGATTCAAAAG 47679 |||| |||||||| || ||| || | |||| |||| || | | || ||||||| | | Sbjct 632144 AATACATTGTTTCGAAAATTCTTTTATTTA-ATTCTTT--TGCAGAATCTGATTCATATG 632088 Query 47680 GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTAT 47739 | || || || ||||||||||| || || || ||||| || ||||| | Sbjct 632087 GGTATCTAAGTAGCATGAAGGTGTCTGCCAATCCCTGTACTCCTATACCTATAGGTCTGT 632028 Query 47740 GAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTAT 47799 | | || || || ||||||||| | | || || | || | || || |||| | Sbjct 632027 GTCTCTTGTTCGATCGCTCAGCTTCCTGAACAGGGTAGTAATTCCTTTCAATTATTTGGT 631968 Query 47800 TTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACT---TGT 47856 | |||||| | || ||||||| || | | | Sbjct 631967 CCAAGTTCCGAGTAATAATTTTTGTAATTTCGTACAGCTTCTTAAAATTGAATTCCCTTT 631908 Query 47857 TATTTATA---ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 ||| || | ||||| | | || ||||| || | |||||||| || || || | Sbjct 631907 TATCTACATCGACAAATTTGCACAACGCGATAGAAGCCAAGTTACATACGGCCACTTCGT 631848 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 ||| ||||||| || || ||| ||| || |||| |||||| || ||||| |||| Sbjct 631847 CTGGTGATGTATATTCAATGATCTCACAACACAGGTTACTACATTTTATCGTACCTAAAT 631788 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 ||| ||||| |||||| | ||||| || ||||| | || || |||| Sbjct 631787 TTTTTTGATTCGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGGAACCCCTGTTT 631728 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTT 48093 |||||||| | | |||| ||||| | ||| || | || || | || Sbjct 631727 CTATCTGACTCTGCAGAATAG-----CAAAC---CATAGATCTTGTGCTAGTACT-GTTT 631677 Query 48094 TATTA---------TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC--CCCAT- 48141 | ||| || | || ||||| ||||| ||| || ||||| | ||||| Sbjct 631676 TTTTACCCATACCCTCCTCCTCATATTTTAAATATAGCTTTTCGAATTCTGCACCCCATG 631617 Query 48142 ACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTT 48201 || || | |||||| ||||||||||| || |||||||| | ||||| | | | | Sbjct 631616 ACTCACT---TAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTGGTTTTCCT 631560 Query 48202 TTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAA-ATCCCTAGTTCTT 48260 ||||||| ||||||| | || |||| ||| | ||| ||| | || ||| |||| |||| Sbjct 631559 TTACTCTCTTCATAAAAAGGTCAGGTACCCATACAGC-ATAGAAAAGATCTCTAGCTCTT 631501 Query 48261 AGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCAT 48320 |||||||| || ||| ||| | ||| || | ||| || | ||||| | |||||| Sbjct 631500 AGTTCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCAC 631441 Query 48321 GGTTCTAAATATATTGCCATTACACCTGGTCGT-TTATTACCTCCTTGATCTATATATCT 48379 ||||| | ||| | ||| | | | | || | || || ||||| |||| |||||| Sbjct 631440 GGTTCGATATACACTGCGA-AAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCT 631382 Query 48380 GGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCC 48439 || |||| ||| | ||||| | |||||| || | || || ||||| ||||| ||||| Sbjct 631381 AGCTGTATCATTAAACACTCTCAGCATTGGTACTAATCCGTTGGATATTCCATTCGTTCC 631322 Query 48440 CGAAAT---ATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 ||| | || || | |||| |||| | || | || |||||||| || Sbjct 631321 TCTAATGTAAGAATTTTGTC---CTCTAATATCCTGTACTGCTACTCCAATACCACCAGC 631265 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 |||| || || || ||| |||| || || || |||| ||||| || ||| Sbjct 631264 TGTTTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGA 631205 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 | |||| | |||||||| ||||||||| || || || ||||| || || Sbjct 631204 TTTCATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAA 631145 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 || || | ||| || |||| | |||| || | || | || || || | | Sbjct 631144 GGTAGGTGTTGCGTGCGTAAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTT 631085 Query 48677 ATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTT 48735 || | ||| ||| | ||| ||||| || ||||| | ||| | | || ||| ||||| | Sbjct 631084 TTCCAGATCTCCAAT-ATGGATACCGATGGATACTCTCATCAGTAGATGTTGTGGTCTCT 631026 Query 48736 CAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAAT 48795 ||| ||| || ||||||| | || || ||| ||||||| ||||| || ||||| | Sbjct 631025 CAATAATCTTTCCATTTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGT 630966 Query 48796 A 48796 | Sbjct 630965 A 630965 >seq24 Length=1435464 Score = 134 bits (148), Expect = 2e-26 Identities = 242/351 (69%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 19153 GCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATA 19212 ||||| ||| || || || ||| || || |||| |||| | |||||||| ||| Sbjct 1241170 GCCCACAGAGCTTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATTCATT 1241111 Query 19213 CGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATA 19272 | ||| | ||| || | || ||||| || || || || | || ||||||||| Sbjct 1241110 CTCTCCTTCTCATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATGAATA 1241051 Query 19273 TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTA 19332 ||||| | || ||||| || ||||| |||| || ||||| || |||| | Sbjct 1241050 TTTTCAACGGCAATCTGGAAGGAATAAAATTTCTTTGCCTCCGTTATTTGCACTTGGCGT 1240991 Query 19333 CAAAATCTT-TCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAA 19391 ||||| | ||| | |||||||| |||||||||||||| ||||||||||| || || Sbjct 1240990 AAAAATTTGCTCG-CTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGGCCAA 1240932 Query 19392 TACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTT 19451 |||||||| || || |||||||||| | ||||| | | |||| || | ||| | Sbjct 1240931 CACATGTTTTATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCT 1240872 Query 19452 AGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATA 19502 || || || | ||| ||| ||||||| || || || || ||||| || || Sbjct 1240871 GGACAAGTCAATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTA 1240821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108603261920