Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq27 91.5 1e-13 >seq27 Length=1720986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || || || ||||||| ||| |||||||| || |||||||| || | ||| | Sbjct 554232 CGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA 554173 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || || || || ||||| || || |||| || ||||| | ||||| || |||||| Sbjct 554172 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTG 554113 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || ||||||| | | | || || | ||| || |||| || || Sbjct 554112 TCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554053 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| | |||||||||||||| ||||| Sbjct 554052 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || || ||||| |||| ||| || ||||| || |||||||| || | ||| || Sbjct 554916 CGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCG 554857 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || || || || ||||| || || |||| || ||||| | ||||| || |||||| Sbjct 554856 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTG 554797 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || ||||||| | | | || || | ||| || |||| || || Sbjct 554796 TCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554737 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| | |||||||||||||| ||||| Sbjct 554736 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || || || ||||||| ||| |||||||| || |||||||| || | ||| | Sbjct 554004 CGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA 553945 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || || || || ||||| || || |||| || ||||| | ||||| || || || Sbjct 553944 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTA 553885 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || ||||||| | | | || || | ||| || |||| || || Sbjct 553884 TCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 553825 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| | |||||||||||||| ||||| Sbjct 553824 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || || || ||||||| ||| |||||||| || |||||||| || | ||| | Sbjct 554460 CGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA 554401 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || || || || ||||| || || |||| || ||||| | ||||| || || || Sbjct 554400 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTA 554341 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || ||||||| | | | || || | ||| || |||| || || Sbjct 554340 TCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554281 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| | |||||||||||||| ||||| Sbjct 554280 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || || || ||||||| ||| |||||||| || |||||||| || | ||| | Sbjct 554688 CGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA 554629 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || || || || ||||| || || |||| || ||||| | ||||| || || || Sbjct 554628 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTA 554569 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || ||||||| | | | || || | ||| || |||| || || Sbjct 554568 TCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554509 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| | |||||||||||||| ||||| Sbjct 554508 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937470005044