Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq27 95.1 1e-14 >seq27 Length=1720986 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| ||||||| || ||||| ||| || || | || Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | || ||||| || ||||| || | ||| ||||| Sbjct 553850 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553909 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || || || || |||||||| || ||| | ||| || ||||||| ||| Sbjct 553910 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553969 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || | || | || ||| | |||||||| || || Sbjct 553970 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTAT 554019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| ||||||| || ||||| ||| || || | || Sbjct 554018 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554077 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | || ||||| ||||| || || | ||| ||||| Sbjct 554078 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554137 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || || || || |||||||| || ||| | ||| || ||||||| ||| Sbjct 554138 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554197 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || | || | || ||| | |||||||| || || Sbjct 554198 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTAT 554247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| ||||||| || ||||| ||| || || | || Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | || ||||| || ||||| || | ||| ||||| Sbjct 554306 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554365 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || || || || |||||||| || ||| | ||| || ||||||| ||| Sbjct 554366 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554425 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || | || | || ||| | |||||||| || || Sbjct 554426 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTAT 554475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| ||||||| || ||||| ||| || || | || Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | || ||||| || ||||| || | ||| ||||| Sbjct 554534 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554593 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || || || || |||||||| || ||| | ||| || ||||||| ||| Sbjct 554594 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554653 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || | || | || ||| | |||||||| || || Sbjct 554654 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTAT 554703 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| ||||||| || ||||| ||| || || | || Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | || ||||| ||||| || || | ||| ||||| Sbjct 554762 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554821 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || || || || |||||||| || || | ||| || ||||||| ||| Sbjct 554822 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACAAC 554881 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||| ||||| || | ||| |||| ||| | |||||||| || Sbjct 554882 ATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGG 554928 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || ||||||| || ||||| ||| || || | || Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | || ||||| || ||||| || | ||| ||||| Sbjct 553622 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553681 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || || || || |||||||| || ||| | ||| || ||||||| ||| Sbjct 553682 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553741 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || | || | || ||| | |||||||| || || Sbjct 553742 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTAT 553791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404654830612