Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq23 206 2e-47 seq25 158 8e-33 seq18 122 6e-22 >seq23 Length=1360573 Score = 206 bits (228), Expect = 2e-47 Identities = 612/933 (66%), Gaps = 23/933 (2%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| ||||| || | || ||||||||||| | || | || || |||||| Sbjct 568437 GAAGATGGAATTTTCGAAGTGAAGGCTACAGCTGGAGACACTCACTTGGGAGGAGAAGAT 568378 Query 475400 TTTGATAATAGACTTGTATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTT--- 475456 ||||| || ||| | || | |||||||||||||| || || ||||||| || Sbjct 568377 TTTGACAACAGATTGGTCAACTTTTGTGTTGAAGATTTTAAAAGAAAAAATAGAGGAAAG 568318 Query 475457 GATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAG 475516 ||| | || | | | | ||| || ||| | | ||||| ||||| | || || Sbjct 568317 GATTTATCCAAAAATAGCAGAGCTTTGAGAAGATTACGAACTCAGTGTGAGAGAGCCAAA 568258 Query 475517 CGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATT 475576 || | | || || | || ||| | || | ||| ||||||| || |||||||| || Sbjct 568257 CGTACCTTGTCCTCCTCCACACAAGCCACCATCGAAATTGATTCCCTCTTTGAAGGTATC 568198 Query 475577 GATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGA 475636 || || | | | | || || | |||||| || | ||| ||| ||| | Sbjct 568197 GACTACAGTGTAACAGTAAGCAGAGCCAGATTTGAGGAATTATGTATCGATTACTTCCGT 568138 Query 475637 AAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTC 475696 | || | || ||||| | || | | |||| | | | ||||| || Sbjct 568137 GATACGCTAATCCCTGTTGAGAAGGTGTTGAAAGATGCAATGATGGACAAGAAGAGCGTG 568078 Query 475697 CATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCA 475756 || ||| |||||||||| || ||||| ||||||||||| ||||| | | | || Sbjct 568077 CACGAAGTTGTTCTTGTTGGTGGTTCCACAAGAATTCCCAAAATTCAAACACTCATTAAG 568018 Query 475757 TCATATTTTAATGGTAAA-AAGTT---AAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812 || ||||| || || ||| | || || | || ||||||||||| ||||| Sbjct 568017 GAATTCTTTAACGGAAAGGAAGCCTGCAGATCAA----TCAACCCTGATGAAGCCGTTGC 567962 Query 475813 ATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGT---CAATCAGACGAGAAACTAAA 475869 |||||| ||||| || |||||||| ||||| || ||| ||||| | | || | | Sbjct 567961 ATATGGTGCTGCAGTGCAAGCAGCCATTTTGTCCGGTGACCAATCCAATGCCGTACAAGA 567902 Query 475870 TAATATTGTACTTGTTGACGTAA-CTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGA 475928 | ||| ||| || || |||| | | || ||| | ||||| | ||||| Sbjct 567901 CT-TGTTGCTCTTA--GATGTGTGCTCCTTATCCCTT-GGTTTGGAAACCGCAGGAGGAG 567846 Query 475929 TTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAA--TCAAAAGTATT 475986 ||||||| || || ||||| |||||||| | ||||| ||| || ||||| | || Sbjct 567845 TTATGACCAAGCTCATTGAGAGAAATACCACGATCCCCGCCAAGAAGAGTCAAA--TCTT 567788 Query 475987 TTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAA 476046 | || ||| ||||||| ||| || || |||||| | | ||||| |||||| Sbjct 567787 CACTACCTATGCTGATAACCAACCAGGAGTGTTGATCCAAGTGTACGAAGGAGAAAGAGC 567728 Query 476047 ATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCC 476106 | || || || |||||| | || | ||| | || || ||||| || ||||| || Sbjct 567727 CCTAACCAAGGACAATAACCTTTTAGGTAAATTTCACCTAGACGGTATCCCACCTGCCCC 567668 Query 476107 CAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 ||| |||||| |||||||||||||| ||||| |||||||| |||||||| |||||||| Sbjct 567667 AAGAAAAGTTCCACAAATTGAAGTTACCTTTGACATTGATGCCAATGGTATCCTTAATGT 567608 Query 476167 TACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAATCGTGG 476226 |||||| ||| || |||| | ||| || |||| || ||||| || | || Sbjct 567607 CACTGCTGTTGAAAAGTCTACTGGAAAGCAGAACCATATTACCATTACGAATGACAAGGG 567548 Query 476227 TAGATTTACTGAAGAACAAATTCAACGTATGGT 476259 ||||| | |||| ||||| | |||||||| Sbjct 567547 AAGATTGTCCCCAGAAGAAATTGACCGTATGGT 567515 Score = 178 bits (196), Expect = 8e-39 Identities = 378/558 (68%), Gaps = 11/558 (2%) Strand=Plus/Minus Query 474326 ATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGT 474385 || || || |||||||| | || || || || || || | || ||| ||| | Sbjct 569064 ATCGCCATCGGTATTGACCTTGGTACCACCTATTCCTGCGTCGGAGTATGGAGAAACGAA 569005 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || ||||| || |||||||||||||| || || ||||| || || || |||||| | || Sbjct 569004 AATGTAGATATCATTGCCAATGACCAGGGAAACAGAACCACTCCCTCCTATGTTGCCTTC 568945 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||||| || || || || |||||||| ||||| | |||| ||| || || | Sbjct 568944 ACTGACACGGAGAGGCTAATCGGAGATGCCGCTAAGAACCAAGTGGCAAGGAACCCAGAA 568885 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || ||| |||| |||||||| || || ||||| | || || ||| | |||| || Sbjct 568884 AACACTGTTTTCGATGCTAAGAGGTTAATTGGAAGGAAGTTCACTGAATCTTCTGTGCAG 568825 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAA-----TGTTGGTGGTAAACCATATA 474620 |||||| || ||||| |||| || |||| ||||| || ||||| | Sbjct 568824 AGCGATATGAAACACTGGCCCTTTACCGT--TAAATCCGGTGTTGATGAGAAACCCATGA 568767 Query 474621 TAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680 | |||| | | ||| || | ||| |||| || ||| |||| ||||| |||| Sbjct 568766 TTGAAGTGAGCTATCAAGGAGAGAAGAAATTATTTCACCCCGAAGAAATCTCTTCTATGG 568707 Query 474681 TTTTAGCCAAA-ATGAAACA-AACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 |||| || ||| |||||| | || ||| | | | | ||| | ||| |||| Sbjct 568706 TTTT-GCAAAAGATGAAAGAGAATGCCGAAGCCTTCT-TAGGAAAGTCTATAAAAAATGC 568649 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 ||| || || || ||||| |||||||||||||| ||| | ||||| || || || || || Sbjct 568648 AGTCATCACCGTCCCAGCTTATTTTAATGATTCACAAAGGCAAGCCACCAAGGACGCAGG 568589 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | ||||| ||| | |||||| | | || ||||| || ||||| ||||| || |||| Sbjct 568588 TACCATTGCTGGTTTGAATGTTATGAGAATCATTAACGAGCCAACCGCAGCTGCTATTGC 568529 Query 474859 TTATGGTCTTGATAAGAA 474876 ||||||||| | || || Sbjct 568528 ATATGGTCTTCACAAAAA 568511 >seq25 Length=1531272 Score = 158 bits (174), Expect = 8e-33 Identities = 384/572 (67%), Gaps = 21/572 (4%) Strand=Plus/Plus Query 475595 ACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTT 475654 || || || || |||||||| | | ||| | |||||| |||| | |||||||| Sbjct 712880 ACGAGAGCCAAGTTTGAAGAATTGAATGATGACTTATTTAGAGAAACTCTAGAACCCGTA 712939 Query 475655 GAACAAGTTCTCAGAG-ATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTG 475712 | | || || |||| | | ||| ||| || | || || || |||| |||||||||| Sbjct 712940 AAGAAGGTACT-AGAGGACGCAAAATATGAAAAGAGCAAAA-TCGATGAGATTGTTCTTG 712997 Query 475713 TAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTA 475772 ||||||| ||||| | || || ||||| | |||| | | || ||||||||||| Sbjct 712998 TAGGAGGATCAACTCGTATCCCCAAAATTCAACAAATTATAAAAGAATTTTTTAATGGTA 713057 Query 475773 AAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAG 475832 | | ||| | || | || || ||||||||||| || ||||| |||||| | |||| Sbjct 713058 AGGAACCCAATAGAGGTATCAACCCAGATGAAGCTGTAGCCTATGGTGCTGCTATTCAAG 713117 Query 475833 CAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTG-TTGACGTA 475891 | | |||| | | || ||| | || || | || | || |||| | || || Sbjct 713118 CTGGTATTATTTTGGG------AGAAG---AATTACAAGATGTGGT-CTTGCTAGATGTT 713167 Query 475892 ACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGA 475951 |||||||| | ||||| | ||||| |||||||| || ||||| | || ||| | ||| Sbjct 713168 ACTCCACTGACGTTAGGAATAGAAACCGTTGGAGGTATCATGACACAACTCATTAAAAGA 713227 Query 475952 AATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA 476011 || || |||||| || |||||| || ||||| || || || || ||| || Sbjct 713228 AACACAGTTATCCCCACGAAGAAATCACAAACCTTTTCTACCTACCAAGACAACCAACCA 713287 Query 476012 ACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT 476071 |||| |||||| | ||||||||||||||| ||| || || | | ||| | ||| Sbjct 713288 GCTGTGTTAATCCAAGTATTTGAAGGTGAAAGAGCATTAACCAAGG---ACAACCATCTT 713344 Query 476072 ---GGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAA 476128 |||| || | || ||| || || || || | ||||| || || |||||||| Sbjct 713345 TTAGGAAAATTCGAACTCACAGGAATCCCACCAGCACAGAGAGGTGTCCCCAAAATTGAA 713404 Query 476129 GTTACTTTTGATATTGATGCAAATGGTATTCT 476160 ||||| || | ||| |||||| ||||| Sbjct 713405 GTTACATTCACAGTAGATAAAAATGGAATTCT 713436 >seq18 Length=2187873 Score = 122 bits (134), Expect = 6e-22 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 290828 CCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCA 290887 ||| ||| ||| | ||||||||||| || || ||||||| | ||||| | ||||||| Sbjct 1437127 CCAAATGCTAAAGCCGCTGCTGTTGGCTCGTTAATAATTCGGAGCACATCCAAACCTGCA 1437068 Query 290888 ATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTA 290947 |||||| | | || || || || | ||| | |||||||||||||||||| ||||| Sbjct 1437067 ATTTTTCCTGCGTCCTTGGTGGCTTGCCTTTGTGAATCATTAAAATAAGCAGGTACTGTG 1437008 Query 290948 ATAACAGCtttttccactttctttttcaaataattttctgccatttgttttattt 291002 |||||||||| | |||||| || ||| |||||||| || ||| ||| |||| Sbjct 1437007 ATAACAGCTTGGTGTACTTTCCTTCCCAAGTAATTTTCAGCTGTTTCTTTCATTT 1436953 Score = 118 bits (130), Expect = 7e-21 Identities = 271/409 (66%), Gaps = 12/409 (3%) Strand=Plus/Plus Query 475787 AGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCA 475846 ||||| || ||||||||||| ||||||| || || ||| |||| | || | ||| | Sbjct 1437663 AGTGTCAACCCTGATGAAGCAGTTGCATTAGGTGCAGCTATCCAGGGAGGAGTATTAAAA 1437722 Query 475847 GGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTA 475906 || ||||| |||| || | || | | || |||| ||| || || | Sbjct 1437723 GG-----------AGAAA-TAAAAGATTTGCTATTACTAGATGTAATTCCCCTATCTCTT 1437770 Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966 ||| | ||||| | ||||| | | || || | || ||||||| || | ||||| Sbjct 1437771 GGTATAGAAACGCTAGGAGGAGTCTTCACCAAATTGATCAACAGAAACACCACCATCCCG 1437830 Query 475967 TGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026 |||||||| | |||||||||| |||| || |||||| || | ||| || Sbjct 1437831 ACGAAAAAATCGCAGATATTTTCCACCGCAGCTGACAACCAAACACAGGTGAGTATCAAA 1437890 Query 476027 ATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTT 476086 | || |||| |||||| || | | |||||||| | | ||| |||| || | Sbjct 1437891 GTGTTCCAAGGAGAAAGAGAAATGGCATGCGATAATAAAATGTTAGGATCTTTCGATTTA 1437950 Query 476087 GAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146 | || ||||| ||||| || |||||||| |||||||||||||| || || ||| | || Sbjct 1437951 GTGGGAATTCCACCTGCACCTAGAGGAGTCCCTCAAATTGAAGTCACCTTCGATGTAGAC 1438010 Query 476147 GCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGA 476195 ||||| | ||| |||| || | ||| ||| ||| | ||||||| Sbjct 1438011 GCAAACGCAATTATTAACATTTCCGCTATTGACAAAATGACGAACAAGA 1438059 Score = 96.9 bits (106), Expect = 2e-14 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGC 474738 ||||| | ||||||||| |||| || | || ||||| | ||| ||| | || Sbjct 1436943 GTTTTGGAAAAAATGAAAGAAACAGCT-GAAAATTACTTGGGAAGGAAAGTACACCAAGC 1437001 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || || || || || || |||||||||||||| ||| | ||||| || || || || || Sbjct 1437002 TGTTATCACAGTACCTGCTTATTTTAATGATTCACAAAGGCAAGCCACCAAGGACGCAGG 1437061 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 || |||||||||| | |||| | || |||||||| || ||||||||||| || | || Sbjct 1437062 AAAAATTGCAGGTTTGGATGTGCTCCGAATTATTAACGAGCCAACAGCAGCGGCTTTAGC 1437121 Query 474859 TTATGGTCTTGATAAGA 474875 | ||| | || |||| Sbjct 1437122 ATTTGGATTAGAAAAGA 1437138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177998944144