Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq27 163 1e-35 >seq27 Length=1720986 Score = 163 bits (180), Expect = 1e-35 Identities = 306/447 (68%), Gaps = 2/447 (0%) Strand=Plus/Minus Query 25916 TTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTC 25975 |||| || ||| ||| |||||| | || || | ||| | ||||| || | |||||| Sbjct 631566 TTTTCCTTTACTCTCTTCATAAAAAGGTCAGGTACCCATACAGCATAGAAAAGATCTCTA 631507 Query 25976 GCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAG 26035 ||||| | |||||| || || ||||| || ||||| || || |||||||||||||| Sbjct 631506 GCTCTTAGTTCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAA 631447 Query 26036 TGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACG 26095 ||||| ||||| | ||| | || ||| || || || ||||| |||||||| ||||| Sbjct 631446 TGCCACGGTTCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACA 631387 Query 26096 TATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTT 26155 ||||| || || ||||| || ||| ||| |||||| |||||||| | || | ||| || Sbjct 631386 TATCTAGCTGTATCATTAAACACTCTCAGCATTGGTACTAATCCGTTGGATATTCCATTC 631327 Query 26156 GTGCTATGAATCT-TGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACC 26214 || | ||| | | || |||| ||||||||| || | | || || ||||| Sbjct 631326 GTTCCTCTAATGTAAGAATTTTGTC-CTCTAATATCCTGTACTGCTACTCCAATACCACC 631268 Query 26215 AGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATC 26274 ||| ||| ||| || || | | | || |||||||| |||| || ||| Sbjct 631267 AGCTGTTTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATC 631208 Query 26275 ACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAA 26334 |||||| | | | |||||| ||||| | ||| | | ||| || ||||| || Sbjct 631207 TGATTTCATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAA 631148 Query 26335 TAATGTCGGTGTAGCATGAGTATAATA 26361 || || ||||| || || ||| |||| Sbjct 631147 CAAGGTAGGTGTTGCGTGCGTAAAATA 631121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039913650100