Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 5e-14 >seq27 Length=1720986 Score = 93.3 bits (102), Expect = 5e-14 Identities = 179/258 (69%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 14381 CAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCA 14440 || ||||| || | |||| |||||| | | ||| | ||| |||| |||||||| Sbjct 822077 CAAAGGAAGGTTCTCTATGGTTGCTTTAAAAGAAATTTAAAGAATGAGTGTAAGGTGGCT 822136 Query 14441 CAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCG 14500 ||||| | | |||| | || || | ||| ||||| ||||| ||| ||||||| Sbjct 822137 CAACTTGTTGGATATATAGCAGAACATAGTGCATACCATCATGGAGAATCATCCTTACAA 822196 Query 14501 GACACGATTGTTAAGTTGGC--AAACGACTACACGGGTTCAAACAACATTAACCTTCTTG 14558 | || ||| |||| |||| |||| | | || ||||| || || ||| || | | Sbjct 822197 CAAACCATTATTAATATGGCCCAAACCTTTGTA--GGATCAAATAATATAAACTTTTTAG 822254 Query 14559 AACCGTGTGGTCAATTTGGTACGCGTCTCATG---GGTGGTAAGGATGCTTCT-CAGACG 14614 |||| |||||||||||||||| || | | ||||| || ||||||||| ||| | Sbjct 822255 AACCATGTGGTCAATTTGGTA---GTAGAAAGGAAGGTGGAAAAGATGCTTCTGCAG-CT 822310 Query 14615 AGGTACATTTTCACAAAA 14632 ||||||||||| || ||| Sbjct 822311 AGGTACATTTTTACCAAA 822328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569391200640