Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq27 176 8e-39 seq19 111 3e-19 >seq27 Length=1720986 Score = 176 bits (194), Expect = 8e-39 Identities = 181/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | || | ||| || || | ||||| || || Sbjct 554026 AATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTT 553967 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| || ||||| ||| ||||||||||||||||| ||||| | ||| || || Sbjct 553966 GTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTG 553907 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || |||||||||||||||||||| | ||||| |||| ||| || ||||| Sbjct 553906 ATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGA 553847 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || || || || ||||| ||||||||||| |||||||| Sbjct 553846 TGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 176 bits (194), Expect = 8e-39 Identities = 181/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | || | ||| || || | ||||| || || Sbjct 554482 AATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTT 554423 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| || ||||| ||| ||||||||||||||||| ||||| | ||| || || Sbjct 554422 GTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTG 554363 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || |||||||||||||||||||| | ||||| |||| ||| || ||||| Sbjct 554362 ATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGA 554303 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || || || || ||||| ||||||||||| |||||||| Sbjct 554302 TGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 176 bits (194), Expect = 8e-39 Identities = 181/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | || | ||| || || | ||||| || || Sbjct 554710 AATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTT 554651 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| || ||||| ||| ||||||||||||||||| ||||| | ||| || || Sbjct 554650 GTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTG 554591 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || |||||||||||||||||||| | ||||| |||| ||| || ||||| Sbjct 554590 ATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGA 554531 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || || || || ||||| ||||||||||| |||||||| Sbjct 554530 TGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 167 bits (184), Expect = 4e-36 Identities = 179/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | || | ||| || || | ||||| || || Sbjct 553798 AATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTT 553739 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| || ||||| ||| ||||||||||||||||| ||||| | ||| || || Sbjct 553738 GTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTG 553679 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || |||||||||||||||||||| | ||||| |||| ||| || ||||| Sbjct 553678 ATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGA 553619 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || || || || ||||| || || ||||| |||||||| Sbjct 553618 TGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | || | ||| || || | ||||| || || Sbjct 554254 AATTTGCATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTT 554195 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| || ||||| ||| ||||||||||||||||| ||||| | ||| || || Sbjct 554194 GTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTG 554135 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || ||||| || || |||||||| | ||||| |||| ||| || ||||| Sbjct 554134 ATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGA 554075 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || || || || ||||| ||||||||||| |||||||| Sbjct 554074 TGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 || ||| | |||||||| || || | |||| || || || | || || || || Sbjct 554938 AAATTAAAAACCACCTCGTAAACGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTT 554879 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| || ||||| || ||||||||||||||||| ||||| | ||| || || Sbjct 554878 GTAATCGGACAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTG 554819 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || || ||||| || || |||||||| | ||||| |||| ||| || ||||| Sbjct 554818 ATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGA 554759 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || || || || ||||| ||||||||||| |||||||| Sbjct 554758 TGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 131 bits (144), Expect = 3e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | || | || || || | || || || || Sbjct 553570 AATTTGCATACCACCTCGTAAACGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTT 553511 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| || ||||| || ||||||||||||||||| ||||| | ||| || || Sbjct 553510 GTAGTCGGACAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTG 553451 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || |||||||||||||||||||| | ||||| |||| ||| || ||||| Sbjct 553450 ATCGGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGA 553391 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 ||||| || || | || || || || |||| Sbjct 553390 TGACTCTACATCCAAGGTGATGGTCTTTCCTG 553359 >seq19 Length=2400328 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || ||||| | | | |||| |||||||||||||| || |||||||| || Sbjct 232879 ATCCTCCAACTGCTTTCCTGAATATATTAGCCTCTGTTGATCAGGTGGGATTCCTTCCTT 232820 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| | ||||| | ||| | ||| ||| || ||||| | ||| || || || || || Sbjct 232819 ATCCTCAATTTTTGATTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGAT 232760 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || |||| |||||||| |||| ||||||||| Sbjct 232759 GGTTTTTCCGGTTAATGTTTTTACGAATACTTGCATTTT 232721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654085120960