Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq27 158 2e-33 seq19 105 1e-17 >seq27 Length=1720986 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | |||||| ||||||||||| || | ||||| ||| || ||||| Sbjct 554019 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 553960 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | |||| || |||||||| || || || || | ||| || |||||||| Sbjct 553959 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 553900 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||||||||||||| ||||||||| || | || || || ||| Sbjct 553899 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 553840 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || |||| ||||| | ||| || ||||| Sbjct 553839 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | |||||| ||||||||||| || | ||||| ||| || ||||| Sbjct 554475 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 554416 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | |||| || |||||||| || || || || | ||| || |||||||| Sbjct 554415 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 554356 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||||||||||||| ||||||||| || | || || || ||| Sbjct 554355 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 554296 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || |||| ||||| | ||| || ||||| Sbjct 554295 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | |||||| ||||||||||| || | ||||| ||| || ||||| Sbjct 554703 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 554644 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | |||| || |||||||| || || || || | ||| || |||||||| Sbjct 554643 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 554584 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||||||||||||| ||||||||| || | || || || ||| Sbjct 554583 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 554524 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || |||| ||||| | ||| || ||||| Sbjct 554523 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | |||||| ||||||||||| || | ||||| ||| || ||||| Sbjct 553791 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 553732 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | |||| || |||||||| || || || || | ||| || |||||||| Sbjct 553731 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 553672 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||||||||||||| ||||||||| || | || || || ||| Sbjct 553671 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 553612 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || |||| || || | ||| || ||||| Sbjct 553611 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | |||||| ||||||||||| || | ||||| ||| || ||||| Sbjct 554247 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 554188 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | |||| || |||||||| || || || || | ||| || |||||||| Sbjct 554187 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 554128 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || ||||||||| ||||||||| || | || || || ||| Sbjct 554127 GGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 554068 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || || |||| ||||| | ||| || ||||| Sbjct 554067 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | |||||| ||||| ||||| || | || || ||| || || || Sbjct 553563 ATACCACCTCGTAAACGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCG 553504 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | | || || |||||||| || || || || | ||| || ||||| || Sbjct 553503 GACAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGG 553444 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||||||||||||| ||||||||| || | || || || ||| Sbjct 553443 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 553384 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || | || ||||| || || Sbjct 553383 ACATCCAAGGTGATGGTCTTTCC 553361 >seq19 Length=2400328 Score = 105 bits (116), Expect = 1e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| ||||| || || || | | | |||| ||||||||||||||||| |||||||| | Sbjct 232880 CATCCTCCAACTGCTTTCCTGAATATATTAGCCTCTGTTGATCAGGTGGGATTCCTTCCT 232821 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| | ||||| ||| ||||| | || | || || | || || || || || | Sbjct 232820 TATCCTCAATTTTTGATTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGA 232761 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAA 192547 ||||||| || ||||||||||| | |||| |||||||| || ||| Sbjct 232760 TGGTTTTTCCGGTTAATGTTTTTACGAATACTTGCATTTTGGTAAAAA 232713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479646817800