Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq27 140 6e-28 seq19 105 1e-17 seq24 84.2 4e-11 >seq27 Length=1720986 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| ||||||||||| || | ||||| || || ||||| Sbjct 554019 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 553960 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || |||||||| || || ||||| | ||| || || ||||| Sbjct 553959 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 553900 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||||||||||||| ||||||||| || || || || || ||| Sbjct 553899 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 553840 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || |||| ||||| | || || ||||| Sbjct 553839 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| ||||||||||| || | ||||| || || ||||| Sbjct 554475 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 554416 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || |||||||| || || ||||| | ||| || || ||||| Sbjct 554415 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 554356 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||||||||||||| ||||||||| || || || || || ||| Sbjct 554355 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 554296 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || |||| ||||| | || || ||||| Sbjct 554295 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| ||||||||||| || | ||||| || || ||||| Sbjct 554703 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 554644 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || |||||||| || || ||||| | ||| || || ||||| Sbjct 554643 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 554584 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||||||||||||| ||||||||| || || || || || ||| Sbjct 554583 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 554524 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || |||| ||||| | || || ||||| Sbjct 554523 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| ||||||||||| || | ||||| || || ||||| Sbjct 553791 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 553732 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || |||||||| || || ||||| | ||| || || ||||| Sbjct 553731 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 553672 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||||||||||||| ||||||||| || || || || || ||| Sbjct 553671 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 553612 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || |||| || || | || || ||||| Sbjct 553611 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| ||||||||||| || | ||||| || || ||||| Sbjct 554247 ATACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCG 554188 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || |||||||| || || ||||| | ||| || || ||||| Sbjct 554187 GACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGG 554128 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || ||||||||| ||||||||| || || || || || ||| Sbjct 554127 GGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 554068 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || |||| ||||| | || || ||||| Sbjct 554067 ACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| ||||| ||||| || | || || || || || || Sbjct 553563 ATACCACCTCGTAAACGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCG 553504 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | |||| || |||||||| || || ||||| | ||| || || || || Sbjct 553503 GACAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGG 553444 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||||||||||||| ||||||||| || || || || || ||| Sbjct 553443 GGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCT 553384 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || | || ||||| || || Sbjct 553383 ACATCCAAGGTGATGGTCTTTCC 553361 >seq19 Length=2400328 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| || || || | | | |||| |||||||| |||||||| |||||||| ||| Sbjct 232878 TCCTCCAACTGCTTTCCTGAATATATTAGCCTCTGTTGATCAGGTGGGATTCCTTCCTTA 232819 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || | ||||| ||| ||||| | || || || || | || || || || || ||| Sbjct 232818 TCCTCAATTTTTGATTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATG 232759 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAA 172080 ||||| || ||||||||||| | ||||| |||||||| || ||| Sbjct 232758 GTTTTTCCGGTTAATGTTTTTACGAATACTTGCATTTTGGTAAAAA 232713 >seq24 Length=1435464 Score = 84.2 bits (92), Expect = 4e-11 Identities = 166/243 (68%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 39426 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC 39485 || ||||| | | ||| | || || || || |||||||||| | |||| || | Sbjct 1241062 TCCGAATGAATATTTTCAACGGCAATCTGGAAGGAATAAAATTTCTTTGCCTCCGTTATT 1241003 Query 39486 TGAACTTCG-GAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 39544 || |||| | | ||| | | | || ||||||| || | || || |||||| ||||| Sbjct 1241002 TGCACTTGGCGTAAAAATTTGCTCG-CTAAATTTTCCAACACTATTCCATCACTGGCTGC 1240944 Query 39545 GAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 39604 || || || || |||| ||| || || ||||||||||| || ||||| ||||| || Sbjct 1240943 AAAAAAGGCCAACACATGTTTTATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATC 1240884 Query 39605 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTT 39664 || | |||| | || || || | ||| || |||||| || || ||| | | ||| || Sbjct 1240883 TTTTAAATCGCTGGACAAGTCAATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTT 1240824 Query 39665 ATA 39667 || Sbjct 1240823 GTA 1240821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135683202400