Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq27 257 5e-63 seq18 131 5e-25 seq17 104 7e-17 seq20 89.7 2e-12 >seq27 Length=1720986 Score = 257 bits (284), Expect = 5e-63 Identities = 634/950 (67%), Gaps = 15/950 (2%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCAC 155646 ||||| |||| |||||||| || || | | | || | ||||| || | ||||||| Sbjct 631878 ATAGAAGCCAAGTTACATACGGCCA-CTTCGTCTGGT-GATGTATATTCAATGATCTCAC 631821 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 | ||||||||| || || || || |||||||| || || || || || |||||||| Sbjct 631820 AACACAGGTTACTACATTTTATCGTACCTAAATTTTTTTGATTCGACTTCGCGTTACAAG 631761 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 |||||| || || ||||| || ||||| || ||||| | |||||| | || Sbjct 631760 AATCCTTATACAGCATGTACGGAACCCCTGTTTCTATCTGACTCTGCAGAATAGCAAACC 631701 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATC--TGCCTTCCGACTCATATTTCATATA 155824 | || || | || || | || || || | | || ||| ||||||||| | ||| Sbjct 631700 ATAGATCTTGTGC--TAGTACTGTTTTTTTACCCATACCCTCCTCCTCATATTTTAAATA 631643 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 ||| || | | || |||| | | ||||| | || || || | || ||||| | Sbjct 631642 TAGCTTTTCGAATTCTGCACCCCATGACTCACTTAACCCTGGACATTCATTCGGGCACAT 631583 Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 || | |||| ||| || | |||| | || |||||| | ||| |||| | ||| Sbjct 631582 CAAAGTCCAATTTTGGTTTTCCTTTACTCTCTTCATAAAAAGGTCAGGTACCCATACAGC 631523 Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAA 156004 ||||||||| || || || || || || | || ||||| || || || || || || Sbjct 631522 ATAGAAAAGATCTCTAGCTCTTAGTTCTTCCTTCCCATGATTTTTACGAAGATCCAAAAA 631463 Query 156005 TTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT--- 156061 || |||||| | ||| || || | ||||| || ||| || |||||||| Sbjct 631462 CTCAAAAATATCTGAATGCCACGGTTCGATATACACTGCGAAAGATCCCTTCCTCTTTCC 631403 Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGG-AATAATAC 156120 |||||| || |||||||| | ||| || | ||| || || | ||||| || | |||| | Sbjct 631402 GCCACCTTGGTCTACATATCTAGCTGTATCATTAAACACTCTCAGCATTGGTACTAAT-C 631344 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 | ||||| | ||||| ||||| | ||| | ||| | | || || || | Sbjct 631343 CGTTGGATATTCCATTCGTTCCTCTAATGTAAGAATTTTGTCCTCTAATATCCTGTACTG 631284 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 || |||||||||||| | ||| ||| | ||||| | |||| ||| | ||||| Sbjct 631283 CTACTCCAATACCACCAGCTGTTTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAA 631224 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 | |||||||| ||||| || ||| | || ||| | || ||| | ||| |||| || Sbjct 631223 TGCCTTCAATCGAATCTGATTTCATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTG 631164 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAAT 156360 |||| |||| ||||| | ||||||||||| || |||||||||| | |||||| || Sbjct 631163 GTGTGCCAGAATTGAACAAGGTAGGTGTTGCGTGCGTAAAATACTTCTGAGACATCAGAT 631104 Query 156361 CGTATGTCTCCTTAATC-TTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATC 156419 ||| |||| || | | || || |||| || |||| ||| || || |||||| Sbjct 631103 GGTACGTCT-CTAACGCTTTTTCCAGATCTCCAATATGGATACCGATGGATACTCTCATC 631045 Query 156420 CACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCC 156479 | ||| || || | ||| | |||| ||||| ||||| || ||||| | | |||| Sbjct 631044 AGTAGATGTTGTGGTCTCTCAATAATCTTTCCATTTATTCGAAGGAGGTAGGATCTTTCC 630985 Query 156480 AGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 | ||||| || || || |||||| | ||||| || |||||||||| Sbjct 630984 AAGGTTTTGAATCCAAAGTAATCATAATTGAAATCTCGTGTGTAATCAAT 630935 >seq18 Length=2187873 Score = 131 bits (144), Expect = 5e-25 Identities = 315/466 (68%), Gaps = 17/466 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||| || || || | || || | |||||||||| ||||| ||| || || || Sbjct 775412 CTATCGAATCTTCCTGGTCGCGTAATAGCTGGGTCTAGAATATCCACTCGATTCGTCCCT 775471 Query 288910 GCCAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTG 288965 ||||| || || | || ||| | | | | ||| || ||||| | || ||||| Sbjct 775472 GCCAAGACTACTACTTTATCATTAGATGTA-TGAAAACCGTCCATTTCTACCAACATTTG 775530 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG---AATCACCCGAATCGCTCCt 289022 ||| ||||| | ||| |||||||||||| || | || || ||||| | | || | Sbjct 775531 ATTTAGTGTGTTTTCTCTTTCATCATTTCCTCCACCTGCGAAACCACCCT--TGGATC-T 775587 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 || |||| || ||||| ||||| ||||| || || | | || | || || |||||| Sbjct 775588 CTTCCTACCCACTGCATCTATTTCATCAATAAATATTATGGATGGTGCATGTTTTCTCGC 775647 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 |||||||||||||| || | |||| ||||| ||||||| | | ||| | ||| || Sbjct 775648 TTGAGCAAATAATTCTCTAACTCTCGATGGTCCAATACCAACAAAAACTTCGATAAAATC 775707 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 | | | || | || || | ||||| ||||| |||||||| || | || || | Sbjct 775708 ACTACCACTTATATTAAAAAAAGGCACATTGGCTTCTCCTGCTACAGCTTTGGCTAGTAA 775767 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 |||||| ||||| ||||| | || || ||| | || || || | |||||||| Sbjct 775768 TGTCTTTCCTGTACCAGGGGCACCACATAGCAGAGCCCCTTTCGGCATCTTTGCCCC--T 775825 Query 289263 AGACTT--ATA-TTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC 289305 || || ||| ||| | |||||| | ||||| || |||| |||| Sbjct 775826 AGGTTTTCATATTTTGACGGGGCTC-TCAAAAAATCAACAAATTCC 775870 >seq17 Length=2179341 Score = 104 bits (114), Expect = 7e-17 Identities = 219/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT-TGC 289088 ||||| ||||||||||| ||||| |||| | ||| |||| || || | | ||| || Sbjct 750787 CCAACTGCATCAATTTCATCAATAAAAACGATACATGGAGCATGTTTTTTGGCAGCCTGG 750728 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | ||||||| | || |||| || || ||||||| ||||||| || | Sbjct 750727 AAA-AGCTCTCTTATCCTCCTGGCACCAACTCCTACGAACATTTCCTCAAATTCGGATCC 750669 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 ||| |||||||||||| ||||| ||||| || |||| || || || | | || || Sbjct 750668 TGATGCTTGAATGAATGGGACATTGGCTTCCCCCGCTATGGCTCTAGCAATTAACGTTTT 750609 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||| || ||| || || || | ||||| || | || || || | Sbjct 750608 TCCTGTGCCCGGTTCGCCGGATAGGAGTATCCCCTTGGGCAACTTGGCACCTATTTTTGT 750549 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 | |||| || | | | || ||| | || | ||||| |||||||| | ||| | ||||| Sbjct 750548 AAATTTATCTGAGTTTTTCAAATAATCAATTATTTCTTCAAGTTCTTGTTTCACTTCATC 750489 Query 289329 ACATCCTGCTACATCAGCAAAAGT 289352 ||| ||| |||||| ||||| || Sbjct 750488 ACACCCTTTTACATCTGCAAAGGT 750465 >seq20 Length=3314971 Score = 89.7 bits (98), Expect = 2e-12 Identities = 212/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 || |||||||||||||| |||| | | |||| | | || || ||||||||| Sbjct 2716196 GCGTCAATTTCGTCAATAAAAACGATGGATGGAGCAACTGACCTTGCGTGTGCAAATAAC 2716137 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 | ||||| | ||| || | |||||||| || || | |||||| | ||||| Sbjct 2716136 TGTCTTATTCTTTTTGCCCCCTGGCCAACATATATCTCAATAAATTCTGGGCCGGATGTA 2716077 Query 289156 TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTT 289215 | ||| ||| ||||||||||| ||||||||||| || || | || || |||| Sbjct 2716076 TAAATATATGGAACATTTGCTTCTGTGGCTACTGCCCTAGCTAGCATGGTTTTTCCTGAC 2716017 Query 289216 CCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATATT 289273 || || || || | | ||||||||||| || | | |||| |||| ||| || | Sbjct 2716016 CCTGGAGGACCAACCAGAAGAACTCCCTTAGGCATTCTTGCACCCA--TTTCTTGGTACT 2715959 Query 289274 TCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATC 289333 | || || ||| ||| || |||| |||| |||||| | |||| |||||| || Sbjct 2715958 TTTCTCTATTCCTTATAAAGTCAACAACTTCCAGAAGTTCCAACTTTGATTCATCAATTC 2715899 Query 289334 CTGCTACATCAGCAAAA 289350 | |||| || ||||| Sbjct 2715898 CGGCTATTTCTTCAAAA 2715882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817071985436