Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq27 95.1 2e-14 >seq27 Length=1720986 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 165952 TAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACA 166011 |||||| |||||| | ||| ||| | |||||||| | | || | ||||| ||| Sbjct 822127 TAAGGTGGCTCAACTTGTTGGATATATAGCAGAACATAGTGCATACCATCATGGAGAATC 822186 Query 166012 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 | ||| |||| || ||||| | |||||| ||||| || ||||||||||| Sbjct 822187 ATCCTTACAACAAACCATTATTAATATGGCCCAAACCTTTGTAGGATCAAATAATATAAA 822246 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGC 166131 || | ||||| |||||||||||||| ||| ||||| || |||||| || |||| Sbjct 822247 CTTTTTAGAACCATGTGGTCAATTTGGTAGTAGAAAGGAAGGTGGAAAAGATGCTTCTGC 822306 Query 166132 ATCAAGATATATTTATACCAAA 166153 | | || || |||| ||||||| Sbjct 822307 AGCTAGGTACATTTTTACCAAA 822328 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/181 (72%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 194574 AAAAAT-TGAAAAT--AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACAT 194630 |||||| | ||||| ||||| || || |||||||| || ||||| | | |||||||| Sbjct 1511586 AAAAATGTTAAAATCGAAAATCTTCATTGGGCCAACATACTACCAAAGATTGAAACACAT 1511645 Query 194631 GGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTAACTACTTTACATCGACAACC 194690 ||| |||||||||| ||||| || ||| || | | || | || | ||||||| Sbjct 1511646 GGTGGAGGATAAAATTCATGCCAGGAGTAGAGGTCCTCTGACGATGATAACTAGACAACC 1511705 Query 194691 AAATTGTGGTCGTTCTCAAGG-TGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTA 194749 | | || || || || || ||| || ||| | || ||||||||||||| |||||| | Sbjct 1511706 GACTGAAGGACGATC-CAGGGATGGTGGATTACGTTTCGGAGAAATGGAAAGAGACTGCA 1511764 Query 194750 T 194750 | Sbjct 1511765 T 1511765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489378628640