Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq27 125 6e-24 >seq27 Length=1720986 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| ||||| || || || || || | || ||||| | || Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| |||||| || || || ||||| ||||| || || || ||||| Sbjct 554762 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554821 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || ||||| ||||| | ||||| |||| | |||| ||||| ||| Sbjct 554822 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACAAC 554881 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || |||||||||| || || || || || || Sbjct 554882 ATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGG 554928 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || || || || || | || ||||| | ||||||| | |||| |||||| || Sbjct 553361 GGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAATGTAAAAGCTAAA 553420 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || ||||| |||||||| || || |||||||| ||| | | || || ||||| ||||| Sbjct 553421 ATACAAGATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATTTTCGCCGGAAAACAA 553480 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 | ||||| |||| | |||| || || ||||| ||||||||||| || ||||||| Sbjct 553481 TTAGAGGACGGAAGAACCTTGTCCGACTACAACATCCAAAAGGAATCCACCTTACACTTA 553540 Query 24911 GTGTTGCGATTGCGCGGAGG 24930 || || || || || || || Sbjct 553541 GTCTTACGTTTACGAGGTGG 553560 Score = 93.3 bits (102), Expect = 4e-14 Identities = 124/169 (73%), Gaps = 10/169 (6%) Strand=Plus/Minus Query 139057 ACGTCGACAAATTTGTTGACACAA----ATCGAGGCTATGTTGCACACCGCCACTTCGTC 139112 || |||||||||||| ||||| || || || | ||| || || ||||||||||| Sbjct 631902 ACATCGACAAATTTG----CACAACGCGATAGAAGCCAAGTTACATACGGCCACTTCGTC 631847 Query 139113 GGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATT 139172 || | ||||| | || || ||||| |||||||| || |||||||||||||| Sbjct 631846 TGGTGATGTATATTCAATGATCTCACAACACAGGTTACTACATTTTATCGTACCTAAATT 631787 Query 139173 TTGTTGATTGCTTTTTCG-GTTACAAGCATCTTTGTAAAGCATATACGG 139220 || |||||| | |||| |||||||| ||| || || ||||| ||||| Sbjct 631786 TTTTTGATT-CGACTTCGCGTTACAAGAATCCTTATACAGCATGTACGG 631739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897442535840