Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq27 109 4e-19 >seq27 Length=1720986 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 ||||| ||| | |||| ||||| || ||||| || || || | | | | | || || Sbjct 554911 GACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTC 554852 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 | ||| ||||||||||| || |||| |||||| || | || | || |||||||| | Sbjct 554851 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTG 554792 Query 34888 TATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947 |||||| ||| || | | |||| || | ||| ||||| | ||| |||||||| Sbjct 554791 TATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTT 554732 Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||||| |||||||| || ||||| Sbjct 554731 TCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || ||||| || || || | | | | |||| || | ||| ||||||||||| Sbjct 554208 TCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAA 554149 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| |||||| || | || | || |||||||| | |||||| ||| || | Sbjct 554148 ATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATTT 554089 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | ||| ||||| | ||| |||||||||||||| ||||| |||||| Sbjct 554088 TCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACA 554029 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 554028 AAAATTTGCAT 554018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || ||||| || || || | | | | |||| || | ||| ||||||||||| Sbjct 553752 TCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAA 553693 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| |||||| || | || | || || || || | |||||| ||| || | Sbjct 553692 ATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTT 553633 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | ||| ||||| | ||| |||||||||||||| |||||||| ||| Sbjct 553632 TCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACA 553573 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 553572 AAAATTTGCAT 553562 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || ||||| || || || | | | | |||| || | ||| ||||||||||| Sbjct 553980 TCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAA 553921 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| |||||| || | || | || || || || | |||||| ||| || | Sbjct 553920 ATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTT 553861 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | ||| ||||| | ||| |||||||||||||| ||||| |||||| Sbjct 553860 TCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACA 553801 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 553800 AAAATTTGCAT 553790 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || ||||| || || || | | | | |||| || | ||| ||||||||||| Sbjct 554436 TCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAA 554377 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| |||||| || | || | || || || || | |||||| ||| || | Sbjct 554376 ATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTT 554317 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | ||| ||||| | ||| |||||||||||||| ||||| |||||| Sbjct 554316 TCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACA 554257 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 554256 AAAATTTGCAT 554246 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || ||||| || || || | | | | |||| || | ||| ||||||||||| Sbjct 554664 TCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAA 554605 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| |||||| || | || | || || || || | |||||| ||| || | Sbjct 554604 ATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATTT 554545 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | ||| ||||| | ||| |||||||||||||| ||||| |||||| Sbjct 554544 TCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACA 554485 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 554484 AAAATTTGCAT 554474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692688857332