Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq27 185 1e-41 seq19 86.0 1e-11 >seq27 Length=1720986 Score = 185 bits (204), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || ||||||| |||| ||||| || || || | |||||||| ||| | Sbjct 553791 TGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATC-C 553849 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| |||||||||| ||||||||| ||||| || ||||| Sbjct 553850 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553909 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||||||||| || || ||||||||||| ||| ||||| || | ||||| || Sbjct 553910 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553969 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||||||||| || | |||||||| ||||| ||| |||| |||| Sbjct 553970 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTA 554018 Score = 185 bits (204), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || ||||||| |||| ||||| || || || | |||||||| ||| | Sbjct 554247 TGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATC-C 554305 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| |||||||||| ||||||||| ||||| || ||||| Sbjct 554306 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554365 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||||||||| || || ||||||||||| ||| ||||| || | ||||| || Sbjct 554366 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554425 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||||||||| || | |||||||| ||||| ||| |||| |||| Sbjct 554426 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTA 554474 Score = 185 bits (204), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || ||||||| |||| ||||| || || || | |||||||| ||| | Sbjct 554475 TGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATC-C 554533 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| |||||||||| ||||||||| ||||| || ||||| Sbjct 554534 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554593 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||||||||| || || ||||||||||| ||| ||||| || | ||||| || Sbjct 554594 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554653 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||||||||| || | |||||||| ||||| ||| |||| |||| Sbjct 554654 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTA 554702 Score = 176 bits (194), Expect = 7e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || | || || |||| ||||| || || || | |||||||| ||| | Sbjct 553563 TGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATC-C 553621 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| |||||||||| ||||||||| ||||| || ||||| Sbjct 553622 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553681 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||||||||| || || ||||||||||| ||| ||||| || | ||||| || Sbjct 553682 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553741 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||||||||| || | |||||||| ||||| ||| |||| |||| Sbjct 553742 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTA 553790 Score = 172 bits (190), Expect = 9e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || ||||||| |||| ||||| || || || | |||||||| ||| | Sbjct 554019 TGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATC-C 554077 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| ||||||||| || ||||| ||||| || ||||| Sbjct 554078 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554137 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||||||||| || || ||||||||||| ||| ||||| || | ||||| || Sbjct 554138 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554197 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||||||||| || | |||||||| ||||| ||| |||| |||| Sbjct 554198 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGGTA 554246 Score = 156 bits (172), Expect = 7e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 146056 CAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAATGTAAAAAAT 146114 ||||||| || || || | |||||||| ||| ||| || ||| ||||||||||| | Sbjct 553359 CAGGAAAGACCATCACCTTGGATGTAGAGTCATC-CGACACGATTGAAAATGTAAAAGCT 553417 Query 146115 AAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAA 146174 ||||||||| ||||||||| ||||| |||||||| |||||||||||||| || || ||| Sbjct 553418 AAAATACAAGATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATTTTCGCCGGAAAA 553477 Query 146175 CAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCAT 146234 |||||||| || ||||| || | || || || || ||||| ||||| || | || Sbjct 553478 CAATTAGAGGACGGAAGAACCTTGTCCGACTACAACATCCAAAAGGAATCCACCTTACAC 553537 Query 146235 TTAGTATTACGATTAAGAGGAGGTA 146259 ||||| ||||| ||| |||| |||| Sbjct 553538 TTAGTCTTACGTTTACGAGGTGGTA 553562 Score = 152 bits (168), Expect = 8e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || ||||||| |||| ||||| || || || | |||||||| ||| | Sbjct 554703 TGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATC-C 554761 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||||||| ||||||||| || ||||| ||||| || ||||| Sbjct 554762 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554821 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||||||||| || || ||||||||||| || ||||| || | ||||| || Sbjct 554822 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACAAC 554881 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || ||||| ||||| || | || || || ||||| ||| |||| ||| Sbjct 554882 ATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGGT 554929 >seq19 Length=2400328 Score = 86.0 bits (94), Expect = 1e-11 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||| ||||| ||||||||||||| |||||||| || || | ||||| || ||| | Sbjct 232725 TGCAAGTATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCAT-CC 232783 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||| ||| ||||| | ||| ||||| || ||||| |||||| Sbjct 232784 GAAACGATTAGGAATGTTAAATCAAAAATTGAGGATAAGGAAGGAATCCCACCTGATCAA 232843 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || || || || | | |||| || || || || ||| Sbjct 232844 CAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGAT 232879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786166124841760