Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq27 127 2e-24 >seq27 Length=1720986 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | || ||||| | |||||||||||||| ||||| ||||| | | ||| | Sbjct 554007 AAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTT 553948 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | |||||| || || | || | |||||||||||| || |||||||| ||| Sbjct 553947 CCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCT 553888 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || ||||||| ||| ||| ||| |||| | ||||| || ||||| || | || Sbjct 553887 TTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTG 553828 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || |||| |||||| ||||| || ||||| Sbjct 553827 ATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | || ||||| | |||||||||||||| ||||| ||||| | | ||| | Sbjct 554463 AAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTT 554404 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | |||||| || || | || | |||||||||||| || |||||||| ||| Sbjct 554403 CCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCT 554344 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || ||||||| ||| ||| ||| |||| | ||||| || ||||| || | || Sbjct 554343 TTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTG 554284 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || |||| |||||| ||||| || ||||| Sbjct 554283 ATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | || ||||| | |||||||||||||| ||||| ||||| | | ||| | Sbjct 554691 AAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTT 554632 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | |||||| || || | || | |||||||||||| || |||||||| ||| Sbjct 554631 CCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCT 554572 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || ||||||| ||| ||| ||| |||| | ||||| || ||||| || | || Sbjct 554571 TTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTG 554512 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || |||| |||||| ||||| || ||||| Sbjct 554511 ATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | || ||||| | |||||||||||||| ||||| ||||| | | ||| | Sbjct 553779 AAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTT 553720 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | |||||| || || | || | |||||||||||| || |||||||| ||| Sbjct 553719 CCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCT 553660 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || ||||||| ||| ||| ||| |||| | ||||| || ||||| || | || Sbjct 553659 TTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTG 553600 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || |||| ||| || ||||| || ||||| Sbjct 553599 ATGGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | || ||||| | |||||||||||||| ||||| ||||| | | ||| | Sbjct 554235 AAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTT 554176 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | |||||| || || | || | |||||||||||| || |||||||| || Sbjct 554175 CCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCC 554116 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||| |||| ||| ||| ||| |||| | ||||| || ||||| || | || Sbjct 554115 TTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTG 554056 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || |||| |||||| ||||| || ||||| Sbjct 554055 ATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | ||||| || | |||||||| ||||| ||||| ||||| | | ||| | Sbjct 554919 AAACGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTT 554860 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 || || | |||||| || || | || | |||||||||||| || |||||||| || Sbjct 554859 CCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCC 554800 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||| |||| ||| ||| ||| |||| | ||||| || ||||| || | || Sbjct 554799 TTGTCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTG 554740 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || |||| |||||| ||||| || ||||| Sbjct 554739 ATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | || || || | |||||||| ||||| ||||| || || | | ||| | Sbjct 553551 AAACGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTT 553492 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 || || | |||||| || || | || | |||||||||||| || |||||||| ||| Sbjct 553491 CCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGGGAATACCTTCT 553432 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 || ||||||| ||| ||| ||| |||| | ||||| || Sbjct 553431 TTATCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGA 553391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219068543948