Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq27 87.8 2e-12 >seq27 Length=1720986 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/181 (72%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 193331 AAAAAT-TGAAAAT--AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACAT 193387 |||||| | ||||| ||||| || || |||||||| || ||||| | | |||||||| Sbjct 1511586 AAAAATGTTAAAATCGAAAATCTTCATTGGGCCAACATACTACCAAAGATTGAAACACAT 1511645 Query 193388 GGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTGACTACTTTACATCGACAACC 193447 ||| |||||||||| ||||| || ||| || | |||| | || | ||||||| Sbjct 1511646 GGTGGAGGATAAAATTCATGCCAGGAGTAGAGGTCCTCTGACGATGATAACTAGACAACC 1511705 Query 193448 AAATTGTGGTCGTTCTCAAGG-TGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTA 193506 | | || || || || || ||| || ||| | || ||||||||||||| |||||| | Sbjct 1511706 GACTGAAGGACGATC-CAGGGATGGTGGATTACGTTTCGGAGAAATGGAAAGAGACTGCA 1511764 Query 193507 T 193507 | Sbjct 1511765 T 1511765 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 165162 TAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACA 165221 ||| || |||||| | ||| ||| | |||||||| | | || | ||||| ||| Sbjct 822127 TAAGGTGGCTCAACTTGTTGGATATATAGCAGAACATAGTGCATACCATCATGGAGAATC 822186 Query 165222 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | ||| |||| || ||||| | |||||| ||||| || ||||||||||| Sbjct 822187 ATCCTTACAACAAACCATTATTAATATGGCCCAAACCTTTGTAGGATCAAATAATATAAA 822246 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 165341 || | ||||| |||||||||||||| ||| ||||| || |||||| || | || Sbjct 822247 CTTTTTAGAACCATGTGGTCAATTTGGTAGTAGAAAGGAAGGTGGAAAAGATGCTTCTGC 822306 Query 165342 ATCAAGATATATTTATACCAAA 165363 | | || || |||| ||||||| Sbjct 822307 AGCTAGGTACATTTTTACCAAA 822328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628530980014080