Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq27 100 3e-16 seq19 89.7 5e-13 >seq27 Length=1720986 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| |||||| ||||| || || ||||||||| || || ||||| | Sbjct 554223 AAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAAT 554164 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| ||||||| | ||||| || || || || ||||||||||| || Sbjct 554163 TGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTC-CTGTAT 554105 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || || | | |||| |||||||| | ||| || || | ||||| ||| || || Sbjct 554104 TTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCC 554045 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||| ||||| ||||| Sbjct 554044 CGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || |||| |||||| || || || || ||||||||| || || |||||| | Sbjct 554907 AAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTCTAAT 554848 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| ||||||| | ||||| || || || || ||||||||||| || Sbjct 554847 TGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTC-CTGTAT 554789 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || || | | |||| |||||||| | ||| || || | ||||| ||| || || Sbjct 554788 TTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCC 554729 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||| ||||| ||||| Sbjct 554728 CGTTAGGGTTTTTACAAAAATTTGCAT 554702 >seq19 Length=2400328 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATC-GCC-CATCGTGGACGAGTCCTCGA 133512 || || | ||||||||| ||||| || ||||| || ||| || ||| ||||| | Sbjct 232929 AAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACA--TCCTCCA 232872 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||| || | || || |||| ||| || || || ||||| |||||||| || | Sbjct 232871 ACTGCTTTCCTGAATATATTAGCCTCTGTTGATCAGGTGGGATTCCTTCCTTATCCTCAA 232812 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 | ||||| || | | | | || ||| |||| | |||||| || | ||||| |||||| Sbjct 232811 T-TTTTGATTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTT 232753 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| | ||||||||||| | ||||| Sbjct 232752 CCGGTTAATGTTTTTACGAATACTTGCAT 232724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420630802720