Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq27 143 6e-29 seq28 89.7 1e-12 seq15 84.2 5e-11 >seq27 Length=1720986 Score = 143 bits (158), Expect = 6e-29 Identities = 329/489 (67%), Gaps = 10/489 (2%) Strand=Plus/Plus Query 110677 CAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAG 110736 |||| ||| | || |||||| | ||||| || || || || || | |||||| | |||| Sbjct 631339 CAAC-GGATTAGTACCAATGCTGAGAGTGTTTAATGATACAGCTAGATATGTAGACCAAG 631397 Query 110737 GTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATAT 110793 |||| ||||| || || || || || | ||| ||||||| |||||||||||||| | Sbjct 631398 GTGGCGGAAAGAGGAAGGGATCTTTCGCAGTGTATATCGAACCGTGGCATTCAGATATTT 631457 Query 110794 TTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTAT 110853 |||| || || || |||||||||||||| || ||||||| |||||| | ||| | | Sbjct 631458 TTGAGTTTTTGGATCTTCGTAAAAATCATGGGAAGGAAGAACTAAGAGCTAGAGATCTTT 631517 Query 110854 TTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGT 110913 | ||||| | ||| | | || | || ||||| | || | ||||| | ||| Sbjct 631518 TCTATGCTGTATGGGTACCTGACCTTTTTATGAAGAGAGTAAAGGAAAACCAAAATTGGA 631577 Query 110914 CTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAG 110973 || | ||||| || || | ||| || || ||| || || ||| || ||| Sbjct 631578 CTTTGATGTGCCCGAATGAATGTCCAGGGTTAAGTGAGTCATGGGGTGCAGAATTCGAAA 631637 Query 110974 ACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAAC 111033 | || || ||||||||| | || || | | | ||| | | | ||| ||||| | Sbjct 631638 AGCTATATTTAAAATATGAGGAGGAGGGTATGGGTAAAAAAACAGTACTAGCACAAGATC 631697 Query 111034 TTTGGTTCAAAATCCT--TGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAA 111091 | ||||| || || || ||| | | ||||| || ||| || || ||||||| Sbjct 631698 TATGGTTTGCTATTCTGCAGAGTCAGA--TAGAAACAGGGGTTCCGTACATGCTGTATAA 631755 Query 111092 AGATCATATTAATCGC-AAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATT 111150 ||| | ||| ||| || || ||||||| |||||||| || || || | |||||| Sbjct 631756 GGATTCTTGTAA-CGCGAAGTCGAATCAAAAAAATTTAGGTACGATAAAATGTAGTAACC 631814 Query 111151 TGTGCTGTG 111159 |||| |||| Sbjct 631815 TGTGTTGTG 631823 Score = 84.2 bits (92), Expect = 5e-11 Identities = 131/179 (73%), Gaps = 10/179 (6%) Strand=Plus/Plus Query 279057 AATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAA--ATC-TC 279113 |||||| |||||| |||||| | || |||||||| | || ||| |||| || || Sbjct 821245 AATTAT-TGGTATACCAAAATTGGAGGATGCAAAT---GATGCAGGAAGTAAGCATAGTC 821300 Query 279114 AAGAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACAT-TTGCGATTGCTGGT 279172 | || ||| || | | ||||| |||||||||||||| |||| |||| |||| || Sbjct 821301 AGGATTGTACTCTCATACTTACGGAGGGAGATTCTGCAAAGACATCTTGC-CTTGCGGGA 821359 Query 279173 TTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAA 279231 |||||| || | ||| | ||||||||||| || ||||| | | ||| ||| | ||||| Sbjct 821360 TTATCTATTGTCGGTAGGGATAAATATGGTGTCTTTCCACTTA-AGGGAAAATTATTAA 821417 >seq28 Length=1832627 Score = 89.7 bits (98), Expect = 1e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGT-A 305392 |||||||| | |||||||| || ||| ||||||||| ||| ||| || | | ||| | Sbjct 848345 TGTTCAATCGACAACCATCTCTCCATCGAATGTCTATCATGTGTCACAAGGCGAGAGTGA 848286 Query 305393 TTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTT 305452 | | | | ||| |||||||| || | | ||| || | || || ||||| |||||| Sbjct 848285 TGAAGTACAA-GACCTTTCGATTCAACGAATGTGTGTGCTCTCCGTACAATGCAGATTTT 848227 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| ||||||||| | ||||| || ||| Sbjct 848226 GATGGAGACGAAATGAATTTACATGTGCCACAA 848194 >seq15 Length=914168 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 72301 AAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTG-AGCTTCCATCAAAGTT 72359 ||||| |||||||||||| |||||||||| |||| || | ||| ||||||| |||| Sbjct 673184 AAATTTTCATCTTCAAAATTTTCTCCATAAATAC-TTAAGCTGCCACTTCCATTGTAGTT 673242 Query 72360 CACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATGGAA 72407 ||||| ||| || || |||| ||| || | || || ||||||||||| Sbjct 673243 CACAAAATCCCCCCCCTGAATCATGAACTCTTTTATGACTCTATGGAA 673290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812374230908