Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq27 132 3e-26 >seq27 Length=1720986 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||||| || ||||||| ||| |||||||| |||||||||||||| Sbjct 554017 ACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGA 553958 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || |||||||||||||| ||||| | | |||||||| | || Sbjct 553957 CAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGG 553898 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| | || |||| || | |||||| ||| || | Sbjct 553897 AATACCTTCTTTATCTTGTATTTT-AGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 553839 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || |||| ||||||||||| || |||||| Sbjct 553838 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 553789 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||||| || ||||||| ||| |||||||| |||||||||||||| Sbjct 554245 ACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGA 554186 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || |||||||||||||| ||||| | | |||||||| | || Sbjct 554185 CAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGG 554126 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| | || |||| || | |||||| ||| || | Sbjct 554125 AATACCTTCCTTGTCCTGTATTTT-AGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554067 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || |||| ||||||||||| || |||||| Sbjct 554066 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 554017 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||||| || ||||||| ||| |||||||| |||||||||||||| Sbjct 554473 ACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGA 554414 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || |||||||||||||| ||||| | | |||||||| | || Sbjct 554413 CAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGG 554354 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| | || |||| || | |||||| ||| || | Sbjct 554353 AATACCTTCTTTATCTTGTATTTT-AGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554295 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || |||| ||||||||||| || |||||| Sbjct 554294 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 554245 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||||| || ||||||| ||| |||||||| |||||||||||||| Sbjct 554701 ACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGA 554642 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || |||||||||||||| ||||| | | |||||||| | || Sbjct 554641 CAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGG 554582 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| | || |||| || | |||||| ||| || | Sbjct 554581 AATACCTTCTTTATCTTGTATTTT-AGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554523 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || |||| ||||||||||| || |||||| Sbjct 554522 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 554473 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||||| ||||| |||| ||| || ||||| |||||||||||||| Sbjct 554929 ACCACCTCGTAAACGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGA 554870 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| || |||||||||||||| ||||| | | |||||||| | || Sbjct 554869 CAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGG 554810 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| | || |||| || | |||||| ||| || | Sbjct 554809 AATACCTTCCTTGTCCTGTATTTT-AGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 554751 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || |||| ||||||||||| || |||||| Sbjct 554750 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCATA 554701 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||||| || ||||||| ||| |||||||| |||||||||||||| Sbjct 553789 ACCACCTCGTAAACGTAAGACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGA 553730 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || |||||||||||||| ||||| | | |||||||| | || Sbjct 553729 CAAGGTTCTTCCATCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGG 553670 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| | || |||| || | |||||| ||| || | Sbjct 553669 AATACCTTCTTTATCTTGTATTTT-AGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 553611 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || |||| || || ||||| || |||||| Sbjct 553610 CATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCACAAAAATTTGCATA 553561 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||||| || || |||| ||| || ||||| |||||||| ||||| Sbjct 553561 ACCACCTCGTAAACGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGGA 553502 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| || |||||||||||||| ||||| | | |||||||| | || Sbjct 553501 CAAGGTTCTTCCGTCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGGG 553442 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| | || |||| || | |||||| ||| || | Sbjct 553441 AATACCTTCTTTATCTTGTATTTT-AGCTTTTACATTTTCAATCGTGTCGGATGACTCTA 553383 Query 33701 CGTCAACCGTGATCGTTTTACCTG 33724 | || | ||||| || || |||| Sbjct 553382 CATCCAAGGTGATGGTCTTTCCTG 553359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703887829760