Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq27 116 9e-21 >seq27 Length=1720986 Score = 116 bits (128), Expect = 9e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| ||||| || || || ||||| | ||| Sbjct 553805 AAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAAT 553864 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || ||||| |||||||| ||| || || |||||||| || || Sbjct 553865 GTAAAAGCTAAA-ATACAAGATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTT 553923 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || || || |||||||| || ||| ||||||||||| |||| ||||| || Sbjct 553924 CGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATC 553983 Query 206364 TAC 206366 || Sbjct 553984 CAC 553986 Score = 116 bits (128), Expect = 9e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| ||||| || || || ||||| | ||| Sbjct 554261 AAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAAT 554320 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || ||||| |||||||| ||| || || |||||||| || || Sbjct 554321 GTAAAAGCTAAA-ATACAAGATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTT 554379 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || || || |||||||| || ||| ||||||||||| |||| ||||| || Sbjct 554380 CGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATC 554439 Query 206364 TAC 206366 || Sbjct 554440 CAC 554442 Score = 116 bits (128), Expect = 9e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| ||||| || || || ||||| | ||| Sbjct 554489 AAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAAT 554548 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || ||||| |||||||| ||| || || |||||||| || || Sbjct 554549 GTAAAAGCTAAA-ATACAAGATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTT 554607 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || || || |||||||| || ||| ||||||||||| |||| ||||| || Sbjct 554608 CGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATC 554667 Query 206364 TAC 206366 || Sbjct 554668 CAC 554670 Score = 111 bits (122), Expect = 4e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||| ||||| || || || ||||| | ||| Sbjct 553577 AAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAAT 553636 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || ||||| |||||||| ||| || || |||||||| || || Sbjct 553637 GTAAAAGCTAAA-ATACAAGATAAAGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTT 553695 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || || || |||||||| || ||| ||||||||||| |||| ||||| || Sbjct 553696 CGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATC 553755 Query 206364 TAC 206366 || Sbjct 553756 CAC 553758 Score = 107 bits (118), Expect = 5e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| ||||| || || || ||||| | ||| Sbjct 554033 AAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAAT 554092 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || || || || ||||| ||| || || |||||||| || || Sbjct 554093 GTAAAAGCTAAA-ATACAGGACAAGGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTT 554151 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || || || |||||||| || ||| ||||||||||| |||| ||||| || Sbjct 554152 CGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAACATCCAAAAAGAATC 554211 Query 206364 TAC 206366 || Sbjct 554212 CAC 554214 Score = 98.7 bits (108), Expect = 2e-15 Identities = 127/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 206195 CAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAA-GCAA 206253 ||||||| || ||||| ||||| || || || ||||| | ||| ||||| || | Sbjct 553359 CAGGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAATGTAAAAGCTA 553418 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| |||||||| ||| || || |||||||| || ||||||||||| Sbjct 553419 AA-ATACAAGATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATTTTCGCCGGAAAA 553477 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || || || || ||||| || ||| |||| |||||| |||| || || || || Sbjct 553478 CAATTAGAGGACGGAAGAACCTTGTCCGACTACAACATCCAAAAGGAATCCAC 553530 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| ||||| || || || ||||| | ||| Sbjct 554717 AAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCCGACACGATTGAAAAT 554776 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || || || || ||||| ||| || || |||||||| || || Sbjct 554777 GTAAAAGCTAAA-ATACAGGACAAGGAAGGTATTCCCCCTGATCAGCAAAGACTCATTTT 554835 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || || || || ||||| || ||| ||||||||||| |||| || || || Sbjct 554836 CGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACAACATCCAAAAGGAATC 554895 Query 206364 TAC 206366 || Sbjct 554896 CAC 554898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820376021788