Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq27 147 2e-30 seq19 82.4 7e-11 >seq27 Length=1720986 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| |||| ||||| | ||||| | || || || | | Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | |||||| ||||| |||||||| ||||| || || |||||| Sbjct 553850 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553909 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||||||||||||| || ||| |||||| | || |||| |||| |||| |||||||| Sbjct 553910 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTC--CGATTACA 553967 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||||||||||||| | |||||||| ||| | || |||| || Sbjct 553968 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554016 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| |||| ||||| | ||||| | || || || | | Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | |||||| ||||| |||||||| ||||| || || |||||| Sbjct 554306 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554365 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||||||||||||| || ||| |||||| | || |||| |||| |||| |||||||| Sbjct 554366 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTC--CGATTACA 554423 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||||||||||||| | |||||||| ||| | || |||| || Sbjct 554424 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554472 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| |||| ||||| | ||||| | || || || | | Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | |||||| ||||| |||||||| ||||| || || |||||| Sbjct 554534 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554593 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||||||||||||| || ||| |||||| | || |||| |||| |||| |||||||| Sbjct 554594 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTC--CGATTACA 554651 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||||||||||||| | |||||||| ||| | || |||| || Sbjct 554652 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554700 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || |||| ||||| | ||||| | || || || | | Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | |||||| ||||| |||||||| ||||| || || |||||| Sbjct 553622 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553681 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||||||||||||| || ||| |||||| | || |||| |||| |||| |||||||| Sbjct 553682 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTC--CGATTACA 553739 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||||||||||||| | |||||||| ||| | || |||| || Sbjct 553740 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 553788 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| |||| ||||| | ||||| | || || || | | Sbjct 554018 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554077 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | |||||| ||||| || || || ||||| || || |||||| Sbjct 554078 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554137 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||||||||||||| || ||| |||||| | || |||| |||| |||| |||||||| Sbjct 554138 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTC--CGATTACA 554195 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||||||||||||| | |||||||| ||| | || |||| || Sbjct 554196 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554244 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| |||| ||||| | ||||| | || || || | | Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | |||||| ||||| || || || ||||| || || |||||| Sbjct 554762 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554821 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||||||||||||| || ||| |||||| | || || | |||| |||| |||||||| Sbjct 554822 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTC--CGATTACA 554879 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||| ||||||||| | || || || ||| | || |||| || Sbjct 554880 ACATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGG 554928 Score = 107 bits (118), Expect = 2e-18 Identities = 127/170 (75%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || || | |||||| ||||| |||||||| ||||| || |||||||| Sbjct 553393 CGACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCCGATCA 553452 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 |||||||||||||| || ||| |||||| | || || | |||| |||| ||| ||| Sbjct 553453 GCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTC--CGACTAC 553510 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||| ||||||||| | || ||||| ||| | || |||| || Sbjct 553511 AACATCCAAAAGGAATCCACCTTACACTTAGTCTTACGTTTACGAGGTGG 553560 >seq19 Length=2400328 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||||| || ||||||||||||||||||||| | ||||| | || || || || Sbjct 232720 CAAAATGCAAGTATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGC 232779 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||| || || | | || ||| ||||||| ||||| || || || || || || Sbjct 232780 ATCCGAAACGATTAGGAATGTTAAATCAAAAATTGAGGATAAGGAAGGAATCCCACCTGA 232839 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| || || || || || || || || | || |||| || ||| || || Sbjct 232840 TCAACAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTA 232899 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||| || || || || |||||| | || || || Sbjct 232900 CAACATCCAGAAGGAGTCCACCTTGCACTTGGT 232932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094244216960