Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq23 87.8 2e-12 >seq23 Length=1360573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 183/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 146874 CTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTG 146933 ||| ||| | |||||||| ||| ||||| ||||| | ||| ||| || | ||| Sbjct 1026419 CTTAAGCGTTGGGAAGGGGTAGGGAATCCTGTTTAGCTGCACTTTTAGGCTGTCTATGTG 1026360 Query 146934 GTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGT 146993 |||| ||||||||| || | |||| |||| | || | | |||| | | Sbjct 1026359 GTTGTTGTAGACGTGGGCATTTCCCAAAATGTGTATGAACTGTGCAGGCTGTAAATTGCA 1026300 Query 146994 CACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAG 147053 ||| || || | ||||| |||| | || || |||||||||||||||||||| || Sbjct 1026299 CACCTGTGCAATCATGTGTGTGAATATGGAATAAGATGCTATGTTGAAGGGGACCCCAAG 1026240 Query 147054 GCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAA 147113 |||| ||| | ||||| || |||| ||| || || | ||| ||| |||||||| Sbjct 1026239 ACCCAAGTCACAAGACCTTTGATACATAATGCATGACAGTTTCCCATCGAAAACGTAAAA 1026180 Query 147114 CTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || | ||| || || || || | ||||| Sbjct 1026179 TTGACATAAGATATGACAAGGAGGTAAAGCCAT 1026147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487795779200