Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq19 104 2e-17 seq27 100 3e-16 >seq19 Length=2400328 Score = 104 bits (114), Expect = 2e-17 Identities = 149/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 ||||| ||||| || ||||||||||| |||| ||| | || || | ||| || || Sbjct 232920 GTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACA-TCCTCCAACTGCTTTCC 232862 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || | | || | | ||| ||||| || || || ||||| || || | ||||||| ||| Sbjct 232861 TGAATATATTAGCCTCTGTTGATCAGGTGGGATTCCTTCCTTATCCTCAATTTTTGATTT 232802 Query 134636 GACCGCGTCC-AAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || ||| ||| || ||||| | ||||| || || || |||||||| |||||||| Sbjct 232801 AAC--ATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTTAAT 232744 Query 134694 GTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| | |||||||||| Sbjct 232743 GTTTTTACGAATACTTGCATTTTG 232720 >seq27 Length=1720986 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAGCTG 134569 |||| |||||||| ||||| |||||||| ||| ||| | | | | || || | || Sbjct 553992 TGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA-TCCTCTAATTG 553934 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||| | | |||||||| || || || |||||||| ||||| ||||| Sbjct 553933 TTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTT 553874 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | |||||||| || || || || | || ||||| || || || Sbjct 553873 AGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGT 553814 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| Sbjct 553813 TAGGGTTTTTACAAAAATTTGCAT 553790 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAGCTG 134569 |||| |||||||| ||||| |||||||| ||| ||| | | | | || || | || Sbjct 554448 TGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA-TCCTCTAATTG 554390 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||| | | |||||||| || || || |||||||| ||||| ||||| Sbjct 554389 TTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTT 554330 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | |||||||| || || || || | || ||||| || || || Sbjct 554329 AGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGT 554270 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| Sbjct 554269 TAGGGTTTTTACAAAAATTTGCAT 554246 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAGCTG 134569 |||| |||||||| ||||| |||||||| ||| ||| | | | | || || | || Sbjct 554676 TGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA-TCCTCTAATTG 554618 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||| | | |||||||| || || || |||||||| ||||| ||||| Sbjct 554617 TTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTT 554558 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | |||||||| || || || || | || ||||| || || || Sbjct 554557 AGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGT 554498 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| Sbjct 554497 TAGGGTTTTTACAAAAATTTGCAT 554474 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 || || || | ||||| |||||||||||||| |||||||| ||| | ||| | Sbjct 554916 CGTAAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCG 554857 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||||| || || ||||| | | |||||||| || || || ||||| || Sbjct 554856 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTG 554797 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || ||||| ||| || || | |||||||| || || || || | || ||| Sbjct 554796 TCCTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 554737 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||| ||||| || ||||||||||| Sbjct 554736 GTCTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAGCTG 134569 |||| |||||||| ||||| |||||||| ||| ||| | | | | || || | || Sbjct 553764 TGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA-TCCTCTAATTG 553706 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||| | | |||||||| || || || |||||||| ||||| ||||| Sbjct 553705 TTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTT 553646 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | |||||||| || || || || | || ||||| || || || Sbjct 553645 AGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGT 553586 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||||||||| Sbjct 553585 TAGGGTCTTCACAAAAATTTGCAT 553562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 || || || | ||||| |||||||||||||| |||||||||||| | ||| | Sbjct 553548 CGTAAGACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCG 553489 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||||| || || ||||| | | ||||||||||| || || |||||||| Sbjct 553488 TCCTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGGGAATACCTTCTTTA 553429 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| ||||| ||| || || | |||||||| || || || || | || ||| Sbjct 553428 TCTTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATG 553369 Query 134679 GTTTTACC 134686 || || || Sbjct 553368 GTCTTTCC 553361 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAGCTG 134569 |||| |||||||| ||||| |||||||| ||| ||| | | | | || || | || Sbjct 554220 TGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCA-TCCTCTAATTG 554162 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||| | | |||||||| || || || ||||| || || || ||||| Sbjct 554161 TTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTT 554102 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | |||||||| || || || || | || ||||| || || || Sbjct 554101 AGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGT 554042 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| Sbjct 554041 TAGGGTTTTTACAAAAATTTGCAT 554018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398223110560