Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq27 295 9e-75 seq24 161 1e-34 >seq27 Length=1720986 Score = 295 bits (326), Expect = 9e-75 Identities = 1000/1527 (65%), Gaps = 63/1527 (4%) Strand=Plus/Minus Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 |||||| ||||| || |||||||| | || ||||| || || ||||| || | || || Sbjct 632413 GTAAATGTTACTCGTGTATGGTTCAAAGGACTCATTGTTGCCAAGAATCTGTGACGTCGA 632354 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTA-TTTCTAAGACCATGTGTTATGATTTTAT 68866 ||||| ||||| || || | || || | | ||||| | || ||| | | ||||| | Sbjct 632353 AGCAGTAGGCATTGGAGCTAA-AAGAAGCGAATTTCTCAATCCGTGTTTCTTTATTTTTT 632295 Query 68867 CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACA-----ACATTCCAAAGATCGTA 68921 |||| || | | ||| |||||| | | | | || |||||||| | |||| | Sbjct 632294 CTTTCAGTTTATCCCAGTCCCAATACTTA--TTATCCACCTTCACATTCCACATATCGAA 632237 Query 68922 TTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTC 68981 || |||||||| | || || || | ||| ||||| |||||||| | || Sbjct 632236 CTGAAGAATTCCCTGGCTAGCTGGACTACCCTGATAGGTTTCGTAAGGTCCGTATATTTG 632177 Query 68982 AGCTAGTTCACA---ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTT 69038 || | ||| || || | ||| | ||| | ||||| |||||||||||||| | || Sbjct 632176 TGCCAATTC-CATGGACAT--CTCCAGAGCAGCATAATACATTGTTTCGAAAATTCTTTT 632120 Query 69039 ATTGAGATCTTGTGCT---TCTAGACTATCGAATGGATAATGTAAA-AGAATAAATGCAT 69094 ||| | |||| ||| ||| || | | |||| || | ||| || || || | | Sbjct 632119 ATTTAATTCTTTTGCAGAATCT-GATT--CATATGGGTA-TCTAAGTAGCATGAAGGTGT 632064 Query 69095 CTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTT 69154 ||||||||||||| || || ||||| |||||||| |||||||| || || | ||||||| Sbjct 632063 CTGCCAATCCCTGTACTCCTATACCTATAGGTCTGTGTCTCTTGTTCGATCGCTCAGCTT 632004 Query 69155 CTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTT-- 69212 | ||| ||| || ||||| | || || |||| | | | ||| || || || ||| Sbjct 632003 CCTGAACAGGGTAGTAATTCCTTTCAATTATTTGGTCCA-AGTTCCGAGTAATAATTTTT 631945 Query 69213 --AACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATA---ACAAACATA 69264 || ||| | || || ||||| ||| | | ||||| | ||||| | Sbjct 631944 GTAATTTCGTAC---AGCTTCTTAAAATTGAATTCCCTTTTATCTACATCGACAAATTTG 631888 Query 69265 TTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATT 69324 || || | ||| || | ||||| || || || || | | || ||||| || Sbjct 631887 CACAACGCGATAGAAGCCAAGTTACATACGGCCACTTCGTCTGGTGATGTATATTCAATG 631828 Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| ||| || ||||||||||| || || || | ||||| ||||| ||| | Sbjct 631827 ATCTCACAACACAGGTTACTACATTTTATCGTACCTAAATTTTTTTGATTCGACTTCGCG 631768 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 ||||| | ||||| || || || ||||| || ||||| |||||| | | |||| Sbjct 631767 TTACAAGAATCCTTATACAGCATGTACGGAACCCCTGTTTCTATCTGACTCTGCAGAATA 631708 Query 69445 GATTTCCAAACGACCCTA-GCATTTATTACGGTCTTGTAACGCTT---CTCTTTTTCATA 69500 | ||| | || | | || || ||| || || | || | | ||| | ||||| Sbjct 631707 GCAAACCATA-GATCTTGTGC---TAGTACTGTTTTTTTACCCATACCCTCCTCCTCATA 631652 Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 || | ||||||| ||||||||| | ||||| ||| || || ||||||||||| Sbjct 631651 TTTTAAATATAGCTTTTCGAATTCTGCACCCCATGACTCACTTAACCCTGGACATTCATT 631592 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 || |||||||| | ||| | | ||||| |||| |||||||| || || || | Sbjct 631591 CGGGCACATCAAAGTCCAATTTTGGTTTTCCTTTACTCTCTTCATAAAAAGGTCAGGTAC 631532 Query 69621 CCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAA 69679 ||| | ||| ||| || |||||||| | ||| |||||| || || |||||| || Sbjct 631531 CCATACAGC-ATAGAAAAGATCTCTAGCTCTTAGTTCTTCCTTCCCATGATTTTTACGAA 631473 Query 69680 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCG 69739 |||| | |||||| | |||||| |||||||| ||||| | ||| | || | |||| Sbjct 631472 GATCCAAAAACTCAAAAATATCTGAATGCCACGGTTCGATATACACTGCGAAAGATCCCT 631413 Query 69740 GTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCG 69799 | || || || || |||| ||||| || || | |||| | ||||||||||| | Sbjct 631412 TCCTCTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTAAACACTCTCAGCATTG 631353 Query 69800 G-AATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATA 69858 | | |||| || || ||| | ||||| ||||| ||| ||| | | | | |||| Sbjct 631352 GTACTAAT-CCGTTGGATATTCCATTCGTTCCTCTAATGTAAGAATTTTGTCCTCTAATA 631294 Query 69859 T----TACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTT 69914 | |||| | || || || || || || |||| || || || || |||| Sbjct 631293 TCCTGTACT----GCTACTCCAATACCACCAGCTGTTTTGCTAATCAGGGCGCACTGTTT 631238 Query 69915 CAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGA 69974 | || || | || || || || ||| | ||||| ||| |||||||| ||| Sbjct 631237 TAGAGTCTCGAAAATGCCTTCAATCGAATCTGATTTCATGCAAAGGAGAAAACATGAAGA 631178 Query 69975 CATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTT 70034 |||||| | | || || | ||| || || ||||| | |||||| || || | || Sbjct 631177 CATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGGTAGGTGTTGCGTGCGTAAAATACTT 631118 Query 70035 TTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTA 70093 | ||| | ||||| ||| || || | ||| ||| | ||| ||| | ||| || || | Sbjct 631117 CTGAGACATCAGATGGTACGTCTCTAACGCTTTTTCCAGATCTCCAAT-ATGGATACCGA 631059 Query 70094 TCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACA 70153 | | || | ||||| | ||| || |||| || | | || ||||||| | | Sbjct 631058 TGGATACTCTCATCAGTAGATGTTGTGGTCTCTCAATAATCTTTCCATTTATTCGAAGGA 630999 Query 70154 GGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTA 70211 |||| ||| |||||| ||||| || ||||| || | || ||||| |||| | ||| Sbjct 630998 GGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTAATCATAATTGAAA--TCTCGTGTGTA 630941 Query 70212 AATAATAACAGAATTTAGTTTATCCTT 70238 | ||| | |||||| ||||||| Sbjct 630940 ATCAATTTCCTTGTTTAGTCTATCCTT 630914 >seq24 Length=1435464 Score = 161 bits (178), Expect = 1e-34 Identities = 358/529 (68%), Gaps = 10/529 (2%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT-TAGACC 39690 |||| |||||||| | |||||||| ||||||| |||||||||||| | | | | | Sbjct 1241344 TGTAATCCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGTAACTTGTTC 1241285 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 ||||||| | |||||| |||||| ||| |||| ||| || || || ||||| Sbjct 1241284 T-GCTTTTTAAACCAAAAAATGGCACAGAAACTTCCACTAAATAAAATACCCTCTACACA 1241226 Query 39751 TGCAAATGCAACAAGTCTCTCTCCGTA--ACTT-GTATCATTATGTATCCACTTCTGTGC 39807 ||| || || | || || | | | || || || || ||||||||| || Sbjct 1241225 CGCATTCGCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTT---TATCCACTTGGCAGC 1241169 Query 39808 CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA-ATGTT 39866 ||| |||||| ||||| ||| || || | || ||||| | ||| |||| || | Sbjct 1241168 CCACAGAGCTTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATTCATTCT 1241109 Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 | | || | ||| || | || | |||||||||| ||||| | || ||||| || | Sbjct 1241108 CTCCTTCTC-ATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATGAATAT 1241050 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAAC 39986 |||||| || ||||| || ||||| |||| || || ||||| || | Sbjct 1241049 TTTCAACGGCAATCTGGAAGGAATAAAATTTCTTTGCCTCCGTTATTTGCACTTGGCGTA 1240990 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||| | ||| |||||||| ||||||||||||||| || |||||||| ||||| | Sbjct 1240989 AAAATTTGCTCGCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGGCCAACA 1240930 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 ||||||| || || | |||||||| | ||||| | | || || | ||| | | Sbjct 1240929 CATGTTTTATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTGG 1240870 Query 40107 ATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | | || | ||| ||||||||||| || || || || || || ||||| Sbjct 1240869 ACAAGTCAATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTA 1240821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908559581920