Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23 136 3e-27 >seq23 Length=1360573 Score = 136 bits (150), Expect = 3e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| || || ||||||||| | |||||||| |||||||||| | |||| |||||||| Sbjct 1026147 ATGGCTTTACCTCCTTGTCATATCTTATGTCAATTTTACGTTTTCGATGGGAAACTGTCA 1026206 Query 41109 TGTCAAT-TGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 || || | |||||||||| || ||||| |||| || |||||||| || |||||||| Sbjct 1026207 TG-CATTATGTATCAAAGGTCTTGTGACTTGGGTCTTGGGGTCCCCTTCAACATAGCATC 1026265 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGT 41227 |||| | | |||| | ||||||||||| || ||||||| | |||| | || | Sbjct 1026266 TTATTCCATATTCACACACATGATTGCACAGGTGTGCAATTTACAGCCTGCACAGTTCAT 1026325 Query 41228 TCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 |||| || ||| ||| || | |||| || |||||||| Sbjct 1026326 ACACATTTTGGGAAATGCCCACGTCTACAACAACCACATAGA 1026367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455864368140