Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 4e-14 >seq27 Length=1720986 Score = 93.3 bits (102), Expect = 4e-14 Identities = 170/246 (69%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 |||| ||||||||| | || || ||||||| || || || |||||||||||| || Sbjct 631557 ACTCTCTTCATAAAAAGGTCAGGTACCCATACAGCATAGAAAAGATCTCTAGCTCTTAGT 631498 Query 131708 TCTTCTGTACCCATAAtttttttCAA-ATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766 ||||| | ||||| |||||| || || ||||| || ||||| || | |||||| || Sbjct 631497 TCTTC-CTTCCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCACGG 631439 Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAAC 131823 ||| | ||||||||| | | || || | ||| ||| ||||| | |||| | | | Sbjct 631438 TTCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCTAGC 631379 Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883 | | || | || | || ||| || | || ||||||| ||||||| || | | Sbjct 631378 TGTATCATTAAACACTCTCAGCATTGGTACTAATCCGTTGGATATTCCATTCGTTCCTCT 631319 Query 131884 AATGTA 131889 |||||| Sbjct 631318 AATGTA 631313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934254991136