Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq27 147 3e-30 >seq27 Length=1720986 Score = 147 bits (162), Expect = 3e-30 Identities = 987/1571 (63%), Gaps = 30/1571 (2%) Strand=Plus/Minus Query 110471 TGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCC 110530 |||||||||||| || || | |||||||||||||||| | |||| ||| |||||| Sbjct 632649 TGGTCAATGAAGGCGCCTCGATCGGCCGCCATATCAATGATGTTCTTCTGCTTGATTTCC 632590 Query 110531 CAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAA 110590 ||||| || |||||| | ||| | || | ||||| || |||| || | | Sbjct 632589 CAAACAGTTTTATAGAGCTCCTTCAAGTCGTTGGGGATTTCGCTAATATATTGCACGCTT 632530 Query 110591 CCCCCCGCCTTCAC-CATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAG 110649 || | | || || | | |||||| |||| ||| |||||| | ||| Sbjct 632529 CCGTT-GTGTGCAATCAGCTGTTGCTTCATGTCCTCATCCCACAGACCACGATCGAAGAG 632471 Query 110650 GTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTA 110709 ||| || | | ||| ||| || | | ||| || || || | || ||| Sbjct 632470 GTCCTTCAATAAGTGGGGGTTCACCACAAAAAATTCTCCACTCAGAACCCGCCTGTAGTA 632411 Query 110710 GATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGC 110769 ||||| | ||||||||||||||| | ||||| || || | || |||| || || || Sbjct 632410 AATGTTACTCGTGTATGGTTCAAAGGACTCATTGTTGCCAAGAATCTGTGACGTCGAAGC 632351 Query 110770 TGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTT 110829 || |||||||| || | | ||| || | | || | | ||| || ||| || Sbjct 632350 AGTAGGCATTGGAGCTAAAAGAAGCGAATTTCTCAATCCGTGTTTCTTTATTTTTTCTTT 632291 Query 110830 GAGAACATCCCAGTCGTAGTTGAGCTTGGTTTC-ACCTTC-----CCACATGTCAAACTG 110883 || ||||||||| | | ||| | || |||||| |||||| || ||||| Sbjct 632290 CAGTTTATCCCAGTCCCAATA---CTTATTATCCACCTTCACATTCCACATATCGAACTG 632234 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || ||| || ||| ||||| | ||||||| || | || | || || Sbjct 632233 AAGAATTCCCTGGCTAGCTGGACTACCCTGATAGGTTTCGTAAGGTCCGTATATTTGTGC 632174 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 |||||| | | |||||| | || | |||||| ||||| || || | ||| | Sbjct 632173 CAATTCCATGGACATCTCCAGAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAA 632114 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 || || || |||||| ||| ||| ||| | | || || || || | || Sbjct 632113 TTCTTTTGCAGAATCTGATTCATATGGGTATCTAAGTAGCATGAAGGTGTCTGCCAATCC 632054 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAG---TCTCAAC 111120 || || || | ||| ||||||||||||| | | || || |||| ||| || ||| Sbjct 632053 CTGTACTCCTATACCTATAGGTCTGTGTCTCTTGTTCGA---TCGCTCAGCTTCCTGAAC 631997 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 || || |||| || ||||| | | ||| | || |||| ||| ||||| ||||| Sbjct 631996 AGGGTAGTAATTCCTTTCAATTATTTGGTCCAAGTTCCGAGTAATAATTTTTGTAATTTC 631937 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCGA 111239 | || || | | ||| || | | ||| ||| |||| | |||| | | |||| Sbjct 631936 GTACAGCTTCTTAAAATTGAATTCCCTTTTATCTACATCGACA-AATTTGCACAACGCGA 631878 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || ||||| || || || ||| || || ||| || || | || || || Sbjct 631877 TAGAAGCCAAGTTACATACGGCCACTTCGTCTGGTGATGTATATTCAATGATCTCACAAC 631818 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | ||| || || ||||| || ||||| ||||| || |||| ||| || | || Sbjct 631817 ACAGGTTACTACATTTTATCGTACCTAAATTTTTTTGATTCGACTTCGCGTTACAAGAAT 631758 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||| || |||||||| || ||| || || |||| | |||||||| ||| | Sbjct 631757 CCTTATACAGCATGTACGGAACCCCTGTTTCTATCTGACTCTGCAGAATAGCAAACCATA 631698 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 ||| ||| |||| | || || |||||| |||| || ||| || || Sbjct 631697 GATCTTGTGCTAGTACTGTTTTTTTACCCATACCCTCCTCCTCATATTTTAAATATAGCT 631638 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 ||| || || ||||| | || | ||||| | | || || | | || Sbjct 631637 TTTCGAATTCTGCACCCCATGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAG 631578 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 ||| | ||||| || | |||||| |||||||| || | ||| | | | | Sbjct 631577 TCCAATTTTGGTTTTCCTTTACTCTCTTCATAAAAAGGTCAGGTACCCATACAGCATAGA 631518 Query 111600 AGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 | ||||||||| | | || ||||| | || || || || | || | ||||| Sbjct 631517 AAAGATCTCTAGCTCTTAG-TTCTTCCTTCCCATGATTTTTACGAAGATCCAAAAACTCA 631459 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCA 111715 | ||||| | ||||| || || | ||| ||||||| ||||||||| | | ||| Sbjct 631458 AAAATATCTGAATGCCACGGTTCGATATACACTGCGAAAGATCCCTTCCTCTTTCCGCCA 631399 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG-AATAATACCATC 111774 |||| | |||||| | ||||| | ||||| || | |||||||| | |||| || | Sbjct 631398 CCTTGGTCTACATATCTAGCTGTATCATTAAACACTCTCAGCATTGGTACTAAT-CCGTT 631340 Query 111775 TGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC-A 111833 ||| ||||| || || | ||| ||| || | |||| | ||| || | ||| | Sbjct 631339 GGATATTCCATTCGTTCCTCTAATGTAAGAATTTTGTCCTCTAATATCCTGTA-CTGCTA 631281 Query 111834 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 111893 |||||||| ||||| || || | || |||| | ||||| | | || | Sbjct 631280 CTCCAATACCACCAGCTGTTTTGCTAATCAGGGCGCACTGTTTTAGAGTCTCGAAAATGC 631221 Query 111894 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 111953 | | || || || || || | || || || ||||| || |||||||||| Sbjct 631220 CTTCAATCGAATCTGATTTCATGCAAAGGAGAAAACATGAAGACATTTGGGGTCTTGGTG 631161 Query 111954 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 112012 | |||| |||||| | ||| ||||||||||| | || |||| | || |||||| | | Sbjct 631160 TGCCAGAATTGAACAAGGTAGGTGTTGCGTGCGT-AAAATACTTCTGAGACATCAGATGG 631102 Query 112013 TATGTCTCCAA 112023 || ||||| || Sbjct 631101 TACGTCTCTAA 631091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031780188800