Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq23 89.7 4e-13 >seq23 Length=1360573 Score = 89.7 bits (98), Expect = 4e-13 Identities = 224/337 (66%), Gaps = 19/337 (6%) Strand=Plus/Minus Query 111787 TGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCC 111846 ||||||||||||| ||||| || ||| || ||||| || || || || || ||| Sbjct 1026295 TGTGCAATCATGTGTGTGAATATGGAATAAGATGCTATGTTGAAGGGGACCCCAAGACCC 1026236 Query 111847 ATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGA 111906 | || | || |||||||| | ||||| ||||| | | || ||||||||| Sbjct 1026235 AAGTCACAAGACCTTTGATACATAATGCATGACAGTTTCCCATCGAAAACGTAAAATTGA 1026176 Query 111907 CAAAGTACATGACAAGGAGGCAATGCCAT-----CCCATTCATAAAGGGTCCCCATGCAC 111961 || | | |||||||||||| || ||||| || | || | || ||| |||||| Sbjct 1026175 CATAAGATATGACAAGGAGGTAAAGCCATTTGATCCAAATCTTTAACATTCC--ATGCAC 1026118 Query 111962 ACATGATCATCCTTCTGCT-GTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGC 112020 | | ||| || || || || || | | | || || || || || ||||| | Sbjct 1026117 ATAGGATAATTCTCCTACTCGTTG-GTTCATTTTTTATTAAATGGATAACATTTTTTAAT 1026059 Query 112021 TGGTCTATCCCTTTACCAGTATAATCCGCCTGACATCCA-----GTGTATGTTGCCCCAT 112075 ||||||| |||||| | |||| || ||| || |||||| || ||| Sbjct 1026058 TGGTCTACACCTTTATCTTCGTAAT-----TGTCATACATGTTTGTGTATTCAGCACCAA 1026004 Query 112076 AGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATC 112112 |||||||||| ||||| ||||||||||| ||||| || Sbjct 1026003 AGTGTCTCCACTGGAAACCATAAATAGGTCCCAGGTC 1025967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391945466248564