Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq27 123 2e-23 >seq27 Length=1720986 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || || || || || || || | ||||| || || Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || ||| |||||| || ||||||||| |||| || | Sbjct 553622 GACACGATTGAAAAT--GTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATC 553679 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | ||||| |||||||||||||| || || | | | | |||||||||||||| Sbjct 553680 AGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACA 553739 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || ||||| || || ||||| || || || Sbjct 553740 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 553788 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || || || || | ||||| || || Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || ||| |||||| || ||||||||| |||| || | Sbjct 553850 GACACGATTGAAAAT--GTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATC 553907 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | ||||| |||||||||||||| || || | | | | |||||||||||||| Sbjct 553908 AGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACA 553967 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || ||||| || || ||||| || || || Sbjct 553968 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554016 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || || || || | ||||| || || Sbjct 554018 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554077 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || ||| |||||| ||||| |||||| |||| || | Sbjct 554078 GACACGATTGAAAAT--GTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATC 554135 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | ||||| |||||||||||||| || || | | | | |||||||||||||| Sbjct 554136 AGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACA 554195 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || ||||| || || ||||| || || || Sbjct 554196 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554244 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || || || || | ||||| || || Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || ||| |||||| || ||||||||| |||| || | Sbjct 554306 GACACGATTGAAAAT--GTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATC 554363 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | ||||| |||||||||||||| || || | | | | |||||||||||||| Sbjct 554364 AGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACA 554423 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || ||||| || || ||||| || || || Sbjct 554424 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554472 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || || || || | ||||| || || Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || ||| |||||| || ||||||||| |||| || | Sbjct 554534 GACACGATTGAAAAT--GTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATC 554591 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | ||||| |||||||||||||| || || | | | | |||||||||||||| Sbjct 554592 AGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACA 554651 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || ||||| || || ||||| || || || Sbjct 554652 ACATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554700 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || || || || | ||||| || || Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| || ||| |||||| ||||| |||||| |||| || | Sbjct 554762 GACACGATTGAAAAT--GTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATC 554819 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | ||||| |||||||||||||| || |||| | | | |||||||||||||| Sbjct 554820 AGCAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACA 554879 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| || || ||||| || ||||| || || || Sbjct 554880 ACATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGG 554928 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27874 AAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAA 27933 |||||| || ||||||||| |||| || |||||| | | ||||| ||||||||| Sbjct 553418 AAAATACAAGATAAAGAAGGTATTCCCCCCGATCAGCAAAGACTCATTTTCGCCGGAAAA 553477 Query 27934 CAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCAT 27993 ||||| || |||| | | | ||||||||| |||||||||||||| || ||| || || Sbjct 553478 CAATTAGAGGACGGAAGAACCTTGTCCGACTACAACATCCAAAAGGAATCCACCTTACAC 553537 Query 27994 TTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||||| || || || Sbjct 553538 TTAGTCTTACGTTTACGAGGTGG 553560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862278561956