Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq27 147 5e-30 >seq27 Length=1720986 Score = 147 bits (162), Expect = 5e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| |||||||||| ||| ||||| ||||| |||| || || || Sbjct 554214 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 554155 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || |||| ||| || || || ||||||||||||||||| || || ||| || || Sbjct 554154 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTAT-TTTAGCTTT 554096 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || ||||| || | || || || || ||||| ||||| ||||| | || Sbjct 554095 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 554036 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | |||||| Sbjct 554035 TTTTACAAAAATTTGCAT 554018 Score = 143 bits (158), Expect = 6e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| |||||||||| ||| ||||| ||||| |||| || || || Sbjct 553986 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 553927 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || |||| ||| || || || ||||||||||| || ||||| || ||| || || Sbjct 553926 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTAT-TTTAGCTTT 553868 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || ||||| || | || || || || ||||| ||||| ||||| | || Sbjct 553867 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 553808 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | |||||| Sbjct 553807 TTTTACAAAAATTTGCAT 553790 Score = 143 bits (158), Expect = 6e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| |||||||||| ||| ||||| ||||| |||| || || || Sbjct 554442 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 554383 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || |||| ||| || || || ||||||||||| || ||||| || ||| || || Sbjct 554382 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTAT-TTTAGCTTT 554324 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || ||||| || | || || || || ||||| ||||| ||||| | || Sbjct 554323 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 554264 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | |||||| Sbjct 554263 TTTTACAAAAATTTGCAT 554246 Score = 143 bits (158), Expect = 6e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| |||||||||| ||| ||||| ||||| |||| || || || Sbjct 554670 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 554611 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || |||| ||| || || || ||||||||||| || ||||| || ||| || || Sbjct 554610 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTAT-TTTAGCTTT 554552 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || ||||| || | || || || || ||||| ||||| ||||| | || Sbjct 554551 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 554492 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| || | |||||| Sbjct 554491 TTTTACAAAAATTTGCAT 554474 Score = 140 bits (154), Expect = 8e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| | ||| | |||||||| ||||||| |||||||||| ||| ||||| || || || Sbjct 554911 GACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTC 554852 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || || || || ||||| || |||| ||| || || || ||||||||||||||||| || Sbjct 554851 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTG 554792 Query 225624 GATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCT 225682 || ||| || || ||| ||| || ||||| || | || || || || ||||| |||| Sbjct 554791 TAT-TTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCT 554733 Query 225683 TGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||||||| || | |||||| Sbjct 554732 TTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| |||||||||| ||| ||||| ||||| |||| || || || Sbjct 553758 GTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTCTAATTGTTTTCCG 553699 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || |||| ||| || || || ||||||||||| || ||||| || ||| || || Sbjct 553698 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTAT-TTTAGCTTT 553640 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || ||||| || | || || || || ||||| ||||| ||||| | || Sbjct 553639 TACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGT 553580 Query 225696 TTTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 553579 CTTCACAAAAATTTGCAT 553562 Score = 118 bits (130), Expect = 3e-21 Identities = 138/184 (75%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| | ||| | |||||||| ||||||| ||||| |||| ||| ||||| || || || Sbjct 553543 GACTAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCCTC 553484 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || || || || ||||| || |||| ||| || ||||| ||||||||||| || ||||| Sbjct 553483 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCGGGGGGAATACCTTCTTTATCTTG 553424 Query 225624 GATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCT 225682 || ||| || || ||| ||| || ||||| || | || || || || ||||| |||| Sbjct 553423 TAT-TTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCT 553365 Query 225683 TGCC 225686 | || Sbjct 553364 TTCC 553361 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || |||||||||||||||| ||| | || ||||||||||| ||||| || |||||||| Sbjct 1567322 GCTCCATACACAGGTTGTGCTATGGCTGAGTATTTTAGAGACAATGGAAAGCATGCTTTG 1567381 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || |||| |||||| || ||||||||| Sbjct 1567382 ATTATCTTCGATGACTTGAGTAAACAA 1567408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530772179432