Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq24 107 2e-18 >seq24 Length=1435464 Score = 107 bits (118), Expect = 2e-18 Identities = 203/296 (69%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 4825 TGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGT 4884 ||||||||| | |||||| | || ||||| |||||||| | |||||||| || | Sbjct 1241085 TGTCTATTAACAAGCTATAGGTCTCCGAATGAATATTTTCAACGGCAATCTGGAAGGAAT 1241026 Query 4885 AAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCG 4943 |||| | || || |||| ||| |||| | ||||| || || |||| ||||| Sbjct 1241025 AAAATTTCTTTGCCTCCGTTATTTGCACTTGGCGTAAAAAT-TTGCTCGCTAAATTTTCC 1240967 Query 4944 TTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCG 5003 ||||| || ||||||||||||||||| ||||| ||||| ||| |||| | ||| Sbjct 1240966 AACACTATTCCATCACTGGCTGCAAAAAAGGCCAACACATGTTTTATGAAGTGTTTTTCA 1240907 Query 5004 TCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTC 5063 | || | ||||| | | ||||| | | || |||| ||| ||| | ||| Sbjct 1240906 TTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTGGACAAGTCAATTTCCTCAGCTGTC 1240847 Query 5064 CAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || || || ||||||||||| ||||| | | ||||| || || ||| ||| || Sbjct 1240846 CAGAAGGAGGCTTCCGCTTTCTTGTAAAAATCCCAAACGTCTGGGTACAAAATGGG 1240791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049454269324