Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq27 320 2e-82 seq24 136 5e-27 >seq27 Length=1720986 Score = 320 bits (354), Expect = 2e-82 Identities = 979/1476 (66%), Gaps = 63/1476 (4%) Strand=Plus/Minus Query 77156 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGA 77215 |||||| ||||| || |||||||| | || |||||||| || | ||| || | || || Sbjct 632413 GTAAATGTTACTCGTGTATGGTTCAAAGGACTCATTGTTGCCAAGAATCTGTGACGTCGA 632354 Query 77216 AGCAGTTGGCATAGGTGCCACCAATAAACTA-TTTCTGAGACCATGTGTTCTGATTTTAT 77274 |||||| ||||| || || | || || | | ||||| | || ||| | | ||||| | Sbjct 632353 AGCAGTAGGCATTGGAGCTAA-AAGAAGCGAATTTCTCAATCCGTGTTTCTTTATTTTTT 632295 Query 77275 CTTTTAGATATTTCCAATCCCAA-AGATCTGA---AGGTACAACATCCCAAAGATCGTAT 77330 |||| || | | ||| |||||| | | | | | | || ||| ||| | |||| | Sbjct 632294 CTTTCAGTTTATCCCAGTCCCAATACTTATTATCCACCTTCA-CATTCCACATATCGAAC 632236 Query 77331 TGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCA 77390 || |||||||| | ||||| || | ||| ||||| |||||||| | | ||| Sbjct 632235 TGAAGAATTCCCTGGCTAGCTGGACTACCCTGATAGGTTTCGTAAGGTCCGTATATTTGT 632176 Query 77391 GCTAGTTCACA---AC-TCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTT 77446 || | ||| || || || |||| || | ||||| |||||||||||||| | || Sbjct 632175 GCCAATTC-CATGGACATC---TCCAGAGCAGCATAATACATTGTTTCGAAAATTCTTTT 632120 Query 77447 ATTGAGATCTTGTGCTTCAATACTAT-CAAACGGATAATGTAAA-AGAATAAAGGCATCT 77504 ||| | |||| ||| ||| || || | || || | ||| || || |||| ||| Sbjct 632119 ATTTAATTCTTTTGCAG-AATCTGATTCATATGGGTA-TCTAAGTAGCATGAAGGTGTCT 632062 Query 77505 GCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCT 77564 || |||||||| ||||| ||||| |||||||| |||||||| || || | |||||| Sbjct 632061 GCCAATCCCTGTACTCCTATACCTATAGGTCTGTGTCTCTTGTTCGATCGCTCAGCTTCC 632002 Query 77565 GGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTC---TAACAACTACTTTA 77621 ||| ||| || ||||| | || || |||| | | || | ||| || | | || Sbjct 632001 TGAACAGGGTAGTAATTCCTTTCAATTATTTGGTCCAAGTTCCGAGTAATAATTTTTGTA 631942 Query 77622 ACCACGTCCTTTAGTTTAAGAAAATCAAAT---CTTCCATCTATA---ACAAACATGTTC 77675 | ||| | || || ||||| ||| ||| ||||| | ||||| || | Sbjct 631941 ATTTCGTAC---AGCTTCTTAAAATTGAATTCCCTTTTATCTACATCGACAAATTTGCAC 631885 Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTAT 77734 || || ||||| || | ||||| || || || || | | | | || ||||| || || Sbjct 631884 AACGCGATAGAAGCCAAGTTACATACGGCCACTTCGTCTGGTGATGT-ATATTCAATGAT 631826 Query 77735 CTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT 77794 ||| ||| || ||||||||||| || || || | ||||| ||| || ||| || Sbjct 631825 CTCACAACACAGGTTACTACATTTTATCGTACCTAAATTTTTTTGATTCGACTTCGCGTT 631766 Query 77795 GCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGA 77854 || || |||||||| || || ||||| ||| ||||| ||||| | | ||||| Sbjct 631765 ACAAGAATCCTTATACAGCATGTACGGAACCCCTGTTTCTATCTGACTCTGCAGAATAGC 631706 Query 77855 TTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCT-CTCTCTT--TCATATTG 77911 ||| | || ||| | | || | | ||| | | | | | ||| | ||||||| Sbjct 631705 AAACCATA-GA-TCTTG-TGCTAGTACTGTTTTTTTACCCATACCCTCCTCCTCATATTT 631649 Query 77912 AGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGG 77971 ||||||| ||| ||||| | ||||| ||| || || || |||||||| || Sbjct 631648 TAAATATAGCTTTTCGAATTCTGCACCCCATGACTCACTTAACCCTGGACATTCATTCGG 631589 Query 77972 GCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCA 78031 ||||||||| | ||| | | |||||| |||| |||||||| || ||||||| ||| Sbjct 631588 GCACATCAAAGTCCAATTTTGGTTTTCCTTTACTCTCTTCATAAAAAGGTCAGGTACCCA 631529 Query 78032 TAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATC 78091 || |||| || ||||||| | ||| ||||||| || || ||| || |||||| Sbjct 631528 TACAGCATAGAAAAGATCTCTAGCTCTTAGTTCTTCCTTCCCATGATTTTTACGAAGATC 631469 Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 | |||||| | |||||| |||||||| ||||| | ||| | ||| | | ||| | Sbjct 631468 CAAAAACTCAAAAATATCTGAATGCCACGGTTCGATATACACTGCGAAAGATCCCTTCCT 631409 Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGG-AA 78210 || || || || |||| |||||| || || | |||| | ||||||| |||||| | Sbjct 631408 CTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTAAACACTCTCAGCATTGGTAC 631349 Query 78211 TAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA--ACTTCCACTTG--CGCGAATA 78266 |||| ||||| ||| ||||||| ||||| ||| || | || ||| | | |||| Sbjct 631348 TAAT-CCGTTGGATATTCCATTCGTTCCTCTAATGTAAGAATT----TTGTCCTCTAATA 631294 Query 78267 T----TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTT 78322 | |||| | || || || || || || | || || || ||||| |||| Sbjct 631293 TCCTGTACT----GCTACTCCAATACCACCAGCTGTTTTGCTAATCAGGGCGCACTGTTT 631238 Query 78323 CAATGTATCGTAGATACCCTCTAT--ACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 | || ||| | || || || || | | | || ||||| ||| |||||||| | Sbjct 631237 TAGAGTCTCGAAAATGCCTTCAATCGAATCTGAT--TTCATGCAAAGGAGAAAACATGAA 631180 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 |||||||| | || || | ||| || || || || | ||| |||||||| | Sbjct 631179 GACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGGTAGGTGTTGCGTGCGTAAAATAC 631120 Query 78441 TTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCC 78499 || | ||| | |||| ||| || || | ||| ||| | || ||| | ||| || || Sbjct 631119 TTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTTCCAGATCTCCAAT-ATGGATACC 631061 Query 78500 TACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAA 78559 | | ||| | ||||| | ||| || ||||| |||| |||| ||||||| | Sbjct 631060 GATGGATACTCTCATCAGTAGATGTTGTGGTCTCTCAATAATCTTTCCATTTATTCGAAG 631001 Query 78560 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 78595 | ||| ||| ||||||| ||||| || ||||| || Sbjct 631000 GAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTA 630965 >seq24 Length=1435464 Score = 136 bits (150), Expect = 5e-27 Identities = 358/536 (67%), Gaps = 18/536 (3%) Strand=Plus/Minus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT-TAGTCCACGTTT 48220 || ||||| | |||||||| ||||||| |||||||| || | | | || | | || Sbjct 1241338 CCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGTAACTTGTTCT-GCTT 1241280 Query 48221 TTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 ||| | |||||| || || |||| |||| ||| || || || ||||| |||| Sbjct 1241279 TTTAAACCAAAAAATGGCACAGAAACTTCCACTAAATAAAATACCCTCTACACACGCA-- 1241222 Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT--GTGTATCCACCGTTGT--GCCCAAT 48336 | || || || || | || | ||||| || ||||||| ||| ||||| Sbjct 1241221 TTCGCTACTATCCTTTCGGCAAAGGAGTTCGTGTCGTTTATCCAC--TTGGCAGCCCACA 1241164 Query 48337 CAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCAT 48396 ||| || ||||| ||| || || | || ||||| | ||| ||| || | || | Sbjct 1241163 GAGCTTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATTCATTCTCTCCT 1241104 Query 48397 TGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAA 48456 | ||| || | ||| | |||||||| | ||||| | || || ||||||||||||| Sbjct 1241103 TCTCATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATGAATATTTTCAA 1241044 Query 48457 TTGCCATCTGAAATCCGTAAAAACATCTC---GCTTCTGTGATCTGTACCTC-CGTACAA 48512 || ||||| || | || || || || || || || || || || | |||| || Sbjct 1241043 CGGCAATCTGGAA---GGAATAAAATTTCTTTGCCTCCGTTATTTGCACTTGGCGTAAAA 1240987 Query 48513 AATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACA 48572 | | | || || ||||| || |||||||||||||| || |||||||| || || ||| Sbjct 1240986 ATTTGCTC-GCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGGCCAACACA 1240928 Query 48573 TGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGAT 48632 ||||| || || | |||||| || | | | ||| | | || || | ||| | || Sbjct 1240927 TGTTTTATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTGGAC 1240868 Query 48633 ATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 | || | ||| ||||||||||| || || || || ||||| || || | || ||| Sbjct 1240867 AAGTCAATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTAAAAATCCCA 1240812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668556865920