Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq27 289 4e-73 seq24 136 6e-27 >seq27 Length=1720986 Score = 289 bits (320), Expect = 4e-73 Identities = 993/1523 (65%), Gaps = 55/1523 (4%) Strand=Plus/Minus Query 75751 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGA 75810 |||||| ||||| || |||||||| | || |||||||| || | ||| || | || || Sbjct 632413 GTAAATGTTACTCGTGTATGGTTCAAAGGACTCATTGTTGCCAAGAATCTGTGACGTCGA 632354 Query 75811 AGCAGTCGGCATAGGTGCCACCAATAAACTA-TTTCTGAGACCATGTGTTCTGATTTTAT 75869 |||||| ||||| || || | || || | | ||||| | || ||| | | ||||| | Sbjct 632353 AGCAGTAGGCATTGGAGCTAA-AAGAAGCGAATTTCTCAATCCGTGTTTCTTTATTTTTT 632295 Query 75870 CTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACA-----ACATCCCAGAGATCGTA 75924 |||| || | | ||| |||||| || || | || |||| ||| | |||| | Sbjct 632294 CTTTCAGTTTATCCCAGTCCCAATA--CTTATTATCCACCTTCACATTCCACATATCGAA 632237 Query 75925 TTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTC 75984 || |||||||| | |||||| || | ||| |||||||||| |||| ||| Sbjct 632236 CTGAAGAATTCCCTGGCTAGCTGGACTACCCTGATAGGTTTCGTAAGGTCCGTATATTTG 632177 Query 75985 AGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT 76044 || | ||| | ||| | ||| | ||||| |||||||||||||| | ||||| Sbjct 632176 TGCCAATTCCATGGACATCTCCAGAGCAGCATAATACATTGTTTCGAAAATTCTTTTATT 632117 Query 76045 AAGATCTTGCGCTTCAAGACTAT----CAAAAGGATAATGTAAA-AGAATAAATGCATCT 76099 | |||| || ||| | | || | || || | ||| || || || | ||| Sbjct 632116 TAATTCTTTTGC----AGAATCTGATTCATATGGGTA-TCTAAGTAGCATGAAGGTGTCT 632062 Query 76100 GCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCT 76159 || | |||||| ||||| ||||| |||||||| |||||||| || || |||||||| Sbjct 632061 GCCAATCCCTGTACTCCTATACCTATAGGTCTGTGTCTCTTGTTCGATCGCTCAGCTTCC 632002 Query 76160 GGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTT---- 76215 ||| |||||| ||||| | || || |||| | | | ||| || | || ||| Sbjct 632001 TGAACAGGGTAGTAATTCCTTTCAATTATTTGGTCCA-AGTTCCGAGTAATAATTTTTGT 631943 Query 76216 AACCACGTCCTTTAGTTTGAGAAAATCAAATT---TTCCATCTA--TC-ACAAACATATT 76269 || ||| | || || ||||| |||| || ||||| || ||||| | Sbjct 631942 AATTTCGTAC---AGCTTCTTAAAATTGAATTCCCTTTTATCTACATCGACAAATTTGCA 631886 Query 76270 AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTAT 76329 | || ||||| || | ||||| ||||| || || | | | ||||| || || Sbjct 631885 CAACGCGATAGAAGCCAAGTTACATACGGCCACTTCGTCTGGTGATGTATATTCAATGAT 631826 Query 76330 CTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTT 76389 ||| || || |||||||| || || || || | ||||| ||| || ||| ||| Sbjct 631825 CTCACAACACAGGTTACTACATTTTATCGTACCTAAATTTTTTTGATTCGACTTCGCGTT 631766 Query 76390 ACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGA 76449 ||| || |||||||| || | ||||| || ||||| ||||| | | ||||| Sbjct 631765 ACAAGAATCCTTATACAGCATGTACGGAACCCCTGTTTCTATCTGACTCTGCAGAATAGC 631706 Query 76450 TTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTT--TCATATTGT 76507 ||| | || ||| || | | ||| || | | | ||| | ||||||| | Sbjct 631705 AAACCATAGATCTTGTGCTAGTACTGTT--TTTTTACCCATACCCTCCTCCTCATATTTT 631648 Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| | ||| ||||| | ||||| ||| || || |||||||||||||| Sbjct 631647 AAATATAGCTTTTCGAATTCTGCACCCCATGACTCACTTAACCCTGGACATTCATTCGGG 631588 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 |||||||| | ||| | | |||||| || | |||||||| || ||||||| |||| Sbjct 631587 CACATCAAAGTCCAATTTTGGTTTTCCTTTACTCTCTTCATAAAAAGGTCAGGTACCCAT 631528 Query 76628 AGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCT 76687 | |||| || ||||||| | ||| ||||||| || || ||| || |||||| Sbjct 631527 ACAGCATAGAAAAGATCTCTAGCTCTTAGTTCTTCCTTCCCATGATTTTTACGAAGATCC 631468 Query 76688 AGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGT 76747 | ||||| | |||||| |||||||| ||||| | ||| | || | || | || || | Sbjct 631467 AAAAACTCAAAAATATCTGAATGCCACGGTTCGATATACACTGCGA-AAGATCCCTTCCT 631409 Query 76748 -TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AA 76805 || || || || |||| |||||| || || | |||| | ||||||| |||||| | Sbjct 631408 CTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTAAACACTCTCAGCATTGGTAC 631349 Query 76806 TAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATAT--- 76862 |||| ||||| ||| | ||||| ||||| ||| ||| | | | ||||| Sbjct 631348 TAAT-CCGTTGGATATTCCATTCGTTCCTCTAATGTAAGAATTTTGTCCTCTAATATCCT 631290 Query 76863 -TACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAAT 76921 |||| | || || || || || || |||| || || || || |||| | Sbjct 631289 GTACT----GCTACTCCAATACCACCAGCTGTTTTGCTAATCAGGGCGCACTGTTTTAGA 631234 Query 76922 GTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATT 76981 || || | ||||| || || ||| ||||| ||| |||||||| ||||||| Sbjct 631233 GTCTCGAAAATGCCTTCAATCGAATCTGATTTCATGCAAAGGAGAAAACATGAAGACATT 631174 Query 76982 TGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCA 77041 || | || || | ||| ||||| ||||| | ||| || || || | || | | Sbjct 631173 TGGGGTCTTGGTGTGCCAGAATTGAACAAGGTAGGTGTTGCGTGCGTAAAATACTTCTGA 631114 Query 77042 GAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGC 77100 || | |||| ||| || || | || ||| | ||| ||| | ||| || || | | Sbjct 631113 GACATCAGATGGTACGTCTCTAACGCTTTTTCCAGATCTCCAAT-ATGGATACCGATGGA 631055 Query 77101 GACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTA 77160 || | ||||| | ||| || |||| || | | |||| ||||||| | | ||| Sbjct 631054 TACTCTCATCAGTAGATGTTGTGGTCTCTCAATAATCTTTCCATTTATTCGAAGGAGGTA 630995 Query 77161 TGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATA 77218 ||| ||||||| ||||| || ||||| || | || ||||| |||| | |||| | Sbjct 630994 GGATCTTTCCAAGGTTTTGAATCCAAAGTAATCATAATTGAAA--TCTCGTGTGTAATCA 630937 Query 77219 ATAACCGAATTTAGTTTGTCCTT 77241 || || |||||| | ||||| Sbjct 630936 ATTTCCTTGTTTAGTCTATCCTT 630914 >seq24 Length=1435464 Score = 136 bits (150), Expect = 6e-27 Identities = 354/531 (67%), Gaps = 8/531 (2%) Strand=Plus/Minus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT-TAGTCCACGCTT 46709 || ||||| | |||||||| ||||||| |||||||| ||| | | | || | |||| Sbjct 1241338 CCCTCATCCCGACTAATTAGTTCGTTACTGAATGTGAGTCCATGTAACTTGTTCT-GCTT 1241280 Query 46710 TTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAA 46769 ||| | |||||| || || |||| |||| ||| || || || |||||| ||| Sbjct 1241279 TTTAAACCAAAAAATGGCACAGAAACTTCCACTAAATAAAATACCCTCTACACACGCATT 1241220 Query 46770 TGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA--ATCCACCTTTGAGCCCAATCA 46827 || || | || || || | || | || | | |||||| | |||||| | Sbjct 1241219 CGCTACTA-TC-CTTTCGGCAAAGGAGTTCGTGTCGTTTATCCACTTGGCAGCCCACAGA 1241162 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCA 46887 || || ||||| ||| || || | || ||||| | ||| ||| || | || | Sbjct 1241161 GCTTTGTTCTTCACAGCGGGGATGTTCTCAATAGCGTGAAATAGATTCATTCTCTCCTTC 1241102 Query 46888 CTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATA 46947 ||| || | || | |||||||| | ||||| | || |||||||| ||||||| Sbjct 1241101 TCATCCTTTATGTAGTTGTCTATTAACAAGCTATAGGTCTCCGAATGAATATTTTCAACG 1241042 Query 46948 GCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT-GTACAAAATCG 47006 || ||||| || ||||| |||| || || || || || | ||| ||| | | Sbjct 1241041 GCAATCTGGAAGGAATAAAATTTCTTTGCCTCCGTTATTTGCACTTGGCGTAAAAATTTG 1240982 Query 47007 TTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTT 47066 || | ||||| || ||||||||||||||| || |||||||| ||||| |||||||| Sbjct 1240981 CTC-GCTAAATTTTCCAACACTATTCCATCACTGGCTGCAAAAAAGGCCAACACATGTTT 1240923 Query 47067 AATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATC 47126 || || | |||||||| | | | ||| | | || || | ||| | || | || Sbjct 1240922 TATGAAGTGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTTAAATCGCTGGACAAGTC 1240863 Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCA 47177 | ||| |||||||||||||| || || || ||||| || || | || ||| Sbjct 1240862 AATTTCCTCAGCTGTCCAGAAGGAGGCTTCCGCTTTCTTGTAAAAATCCCA 1240812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934150472960