Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq27 113 1e-19 >seq27 Length=1720986 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | || || |||||||||||||||||||||| || ||||| ||||| || Sbjct 553771 GACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTC 553712 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| |||||||| || || || ||||| || | | || ||||| || ||||| Sbjct 553711 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTG 553652 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||| ||| | || | |||| || |||||| || | || || || || Sbjct 553651 TATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTT 553592 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| || | ||||| Sbjct 553591 TCCCGTTAGGGTCTTCACAAAAATTTGCAT 553562 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | || || |||||||||||||||||||||| || ||||| ||||| || Sbjct 553999 GACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTC 553940 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| |||||||| || || || ||||| || | | || ||||| || ||||| Sbjct 553939 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTG 553880 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||| ||| | || | |||| || |||||| || | || || || || Sbjct 553879 TATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTT 553820 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || || | ||||| Sbjct 553819 TCCCGTTAGGGTTTTTACAAAAATTTGCAT 553790 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | || || |||||||||||||||||||||| || ||||| ||||| || Sbjct 554227 GACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTC 554168 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| |||||||| || || || ||||| || | | || |||||||| || || Sbjct 554167 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTG 554108 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||| ||| | || | |||| || |||||| || | || || || || Sbjct 554107 TATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTT 554048 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || || | ||||| Sbjct 554047 TCCCGTTAGGGTTTTTACAAAAATTTGCAT 554018 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | || || |||||||||||||||||||||| || ||||| ||||| || Sbjct 554455 GACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTC 554396 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| |||||||| || || || ||||| || | | || ||||| || ||||| Sbjct 554395 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTG 554336 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||| ||| | || | |||| || |||||| || | || || || || Sbjct 554335 TATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTT 554276 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || || | ||||| Sbjct 554275 TCCCGTTAGGGTTTTTACAAAAATTTGCAT 554246 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| | || || |||||||||||||||||||||| || ||||| ||||| || Sbjct 554683 GACTAAATGTAAGGTGGATTCTTTTTGGATGTTGTAATCGGACAAGGTTCTTCCATCCTC 554624 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| |||||||| || || || ||||| || | | || ||||| || ||||| Sbjct 554623 TAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTG 554564 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||| ||| | || | |||| || |||||| || | || || || || Sbjct 554563 TATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTT 554504 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || || | ||||| Sbjct 554503 TCCCGTTAGGGTTTTTACAAAAATTTGCAT 554474 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || ||||||||||||||||||| || ||||| || || |||| ||| ||| Sbjct 554898 GTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTCCGTCCTCTAATTGTTTTCCG 554839 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || || || ||||| || | | || |||||||| || || ||||| ||| Sbjct 554838 GCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTT 554779 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| || |||||| || | || || || || ||||| || || Sbjct 554778 ACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTT 554719 Query 152088 TTCACGAAGACCTGCAT 152104 || || || | ||||| Sbjct 554718 TTTACAAAAATTTGCAT 554702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820386066788