Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq27 113 4e-20 >seq27 Length=1720986 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || || ||||| ||| |||| || | | Sbjct 553790 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553849 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| ||||| || |||||||| ||||| ||||| Sbjct 553850 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553909 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || |||| || || |||||||| || ||| | ||| || ||||||| || Sbjct 553910 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553969 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || |||||||||| || ||| | || ||||| Sbjct 553970 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554016 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || || ||||| ||| |||| || | | Sbjct 554018 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554077 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| ||||| ||||| ||||| ||||| ||||| Sbjct 554078 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554137 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || |||| || || |||||||| || ||| | ||| || ||||||| || Sbjct 554138 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554197 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || |||||||||| || ||| | || ||||| Sbjct 554198 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554244 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || || ||||| ||| |||| || | | Sbjct 554246 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554305 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| ||||| || |||||||| ||||| ||||| Sbjct 554306 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554365 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || |||| || || |||||||| || ||| | ||| || ||||||| || Sbjct 554366 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554425 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || |||||||||| || ||| | || ||||| Sbjct 554426 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554472 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || || ||||| ||| |||| || | | Sbjct 554474 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554533 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| ||||| || |||||||| ||||| ||||| Sbjct 554534 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 554593 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || |||| || || |||||||| || ||| | ||| || ||||||| || Sbjct 554594 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 554653 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || |||||||||| || ||| | || ||||| Sbjct 554654 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 554700 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || | || || || ||||| ||| |||| || | | Sbjct 553562 ATGCAAATTTTTGTGAAGACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 553621 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| ||||| || |||||||| ||||| ||||| Sbjct 553622 GACACGATTGAAAATGTAAAAGCTAAAATACAAGATAAAGAAGGTATTCCCCCTGATCAG 553681 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || |||| || || |||||||| || ||| | ||| || ||||||| || Sbjct 553682 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGATGGAAGAACCTTGTCCGATTACAAC 553741 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || |||||||||| || ||| | || ||||| Sbjct 553742 ATCCAAAAAGAATCCACCTTACATTTAGTCTTACGTTTACGAGGTGG 553788 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || || ||||| ||| |||| || | | Sbjct 554702 ATGCAAATTTTTGTAAAAACCCTAACGGGAAAGACCATCACCTTGGATGTAGAGTCATCC 554761 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| ||||| ||||| ||||| ||||| ||||| Sbjct 554762 GACACGATTGAAAATGTAAAAGCTAAAATACAGGACAAGGAAGGTATTCCCCCTGATCAG 554821 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || |||| || || |||||||| || || | ||| || ||||||| || Sbjct 554822 CAAAGACTCATTTTCGCCGGAAAACAATTAGAGGACGGAAGAACCTTGTCCGATTACAAC 554881 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || |||| || || || ||| | || ||||| Sbjct 554882 ATCCAAAAGGAATCCACCTTACACTTGGTCTTACGTTTACGAGGTGG 554928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421811056056928