Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq27 93.3 3e-14 >seq27 Length=1720986 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTC 44184 || |||| ||| | ||| |||||||||||||||||||||| | || | | |||| Sbjct 554913 AAGACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTTC-CGTC 554855 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || | || || ||||| || || | | |||||||| | || | ||||||||| || Sbjct 554854 CTCTAATTGTTTTCCGGCGAAAATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTC 554795 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||| || || | || | || ||||||| || || || |||| || || || Sbjct 554794 CTGTATTTTAGCTTTTACATTTTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGT 554735 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| ||||| || || || |||||||| Sbjct 554734 CTTTCCCGTTAGGGTTTTTACAAAAATTTGCAT 554702 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 || ||||||||||||||||||| | || | | | || || | || || ||||| || Sbjct 553752 TCTTTTTGGATGTTGTAATCGGACAAGGTTCTTC-CATCCTCTAATTGTTTTCCGGCGAA 553694 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | | |||||||| | || | |||||| || || ||| || || | | Sbjct 553693 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCTTTATCTTGTATTTTAGCTTTTACATT 553634 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||||| || || || |||| || || ||||||||||| ||||||||||| Sbjct 553633 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTCTTCAC 553574 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 553573 AAAAATTTGCAT 553562 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 || ||||||||||||||||||| | || | | | || || | || || ||||| || Sbjct 554208 TCTTTTTGGATGTTGTAATCGGACAAGGTTCTTC-CATCCTCTAATTGTTTTCCGGCGAA 554150 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | | |||||||| | || | ||||||||| ||| ||| || || | | Sbjct 554149 AATGAGTCTTTGCTGATCAGGGGGAATACCTTCCTTGTCCTGTATTTTAGCTTTTACATT 554090 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||||| || || || |||| || || ||||||||||| ||||| || || Sbjct 554089 TTCAATCGTGTCGGATGACTCTACATCCAAGGTGATGGTCTTTCCCGTTAGGGTTTTTAC 554030 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 554029 AAAAATTTGCAT 554018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990277153276